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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109108293
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTVPTSLH ACKEIHFPSP LIFTFPVEEE KENIKGLQSV RLNRRIRWKY DVMDIIMGHC  60
   61 VGARPPPCCL ILLLFKLLAT VSQGLPGTGP LGFHFTHSIY NATVYENSAA RTYVNSQSRM 120
  121 GITLIDLSWD IKYRIVSGDE EGFFKAEEVI IADFCFLRIR TKGGNSAILN REIQDNYLLI 180
  181 VKGSVRGEDL EAWTKVNIQV LDMNDLRPLF SPTTYSVTIA ESTPLRTSVA QVTATDADIG 240
  241 SNGEFYYYFK NKVDLFSVHP TSGVISLSGR LNYDEKNRYD LEILAVDRGM KLYGNNGVSS 300
  301 TAKLYVHIER INEHAPTIQV VTHVPFSLEK EPTYAVVTVD DLDDGANGEI ESVSIVAGDP 360
  361 LDQFFLAKEG KWLNEYKIKE RKQIDWESFP YGYNLTLQAK DKGSPQKFSA LKAVHIGNPT 420
  421 RDTVPVRFEK EVYDVSVSEF SPPGVVVAIV KLSPEPIDVE YKLSPGEDAV YFKINPRSGL 480
  481 IVTAQPLNTV KKEVYKLEVT NKEGDLKTQV TISIEDANDH TPEFQQPLYD ANVNESVPVG 540
  541 TSVLTVSASD KDKGENGYIT YSIASLNLLP FAINQFTGVI STTEELDFES SPEIYRFIVR 600
  601 ASDWGSPYRH ESEVNVTIRI GNVNDNSPLF EKVACQGVIS YDFPVGGHIT AVSAIDIDEL 660
  661 ELVKYKIISG NELGFFYLNP DSGVLQLKKS LTNSGIKNGN FALRITATDG ENLADPMSIN 720
  721 ISVLHGKVSS KSFSCRETRV AQKLAEKLLI KAKANGKLNL EDGFLDFYSI NRQGPYFDKS 780
  781 FPSDVAVKED LPVGANILKI KAYDADSGFN GKVLFTISDG NTDSCFNIDM ETGQLKVLMP 840
  841 MDREHTDLYL LNITIYDLGN PQKSSWRLLT INVEDANDNS PVFIQDSYSV NILESSGIGT 900
  901 EIIQVEARDK DLGSNGEVTY SVLTDTQQFA INSSTGIVYV ADQLDRESKA NYSLKIEARD 960
  961 KAESGQQLFS VVTLKVFLDD VNDCSPAFIP SSYSVKVLED LPVGTVIAWL ETHDPDLGLG1020
 1021 GQVRYSLVND YNGRFEIDKA SGAIRLSKEL DYEKQQFYNL TVRAKDKGRP VSLSSVSFVE1080
 1081 VEVVDVNENL HTPYFPDFAV VGSVKENSRI GTSVLQVTAR DEDSGRDGEI QYSIRDGSGL1140
 1141 GRFSIDDESG VITAADILDR ETTGSYWLTV YATDRGVVPL YSTIEVYIEV EDVNDNAPLT1200
 1201 SEPIYYPVVM ENSPKDISVI QIQAEDPDSS SNEKLTYRIT SGNPQNFFAI NIKTGLITTT1260
 1261 SRKLDREQQA EHFLEVTVTD GGPSPKQSTI WVVVQVLDEN DNKPQFPEKV YQIKLPERDR1320
 1321 KKRGEPIYRA FAFDRDEGPN AEISYSIVDG NDDGKFFIDP KTGMVSSRKQ FTAGSYDILT1380
 1381 IKAVDNGRPQ KSSTARLHIE WIKKPPPSPI PLTFDEPFYN FTVMESDRVT EIVGVVSVQP1440
 1441 ANTPLWFDIV GGNFDSAFDA EKGVGTIVIA KPLDAEQRSI YNMSVEVTDG TNVAVTQVFI1500
 1501 KVLDNNDNGP EFSQPNYDVT ISEDVLPDTE ILQIEATDRD EKHKLSYTVH SSIDSISMRK1560
 1561 FRIDPSTGVL YTAERLDHEA QDKHILNIMV RDQEFPYRRN LARVIVNVED ANDHSPYFTN1620
 1621 PLYEASVFES AALGSAVLQV TALDKDKGEN AELIYTIEAG NTGNTFKIEP VLGIITICKE1680
 1681 PDMTTMGQFV LSIKVTDQGS PPMSATAIVR ISVTMSDNSH PKFIHKDYQA EVNENVDIGT1740
 1741 SVILISAISQ STLIYEVKDG DINGIFTINP YSGVITTRKV LDYERTSSYQ LIIQATNMAG1800
 1801 MASNATVNIQ IVDENDNAPV FLFSQYSGSL SEAAPINSIV RSLDNSPLVI RATDADSNRN1860
 1861 ALLVYQIVES TAKKFFTVDS STGAIRTIAN LDHETIAHFH FHVHVRDSGS PQLTAESPVE1920
 1921 VNIEVTDVND NPPVFTQAVF ETVLLLPTYV GVEVLKVSAT DPDSEVPPEL TYSLMEGSLD1980
 1981 HFLIDSNSGV LTIKNNNLSK DHYMLIVKVS DGKFYSTSMV TIMVKEAMDS GLHFTQSFYS2040
 2041 TSISENNTNI TKVAIVNAVG NRLNEPLKYS ILNPGNKFKI KSTSGVIQTT GVPFDREEQE2100
 2101 LYELVVEASR ELDYLRVARV VVRVNIEDIN DNSPVFVGLP YYAAVQVDAE PGTLIYQVTA2160
 2161 IDKDKGPNGE VTYVLQDDYG HFEINPNSGN VILKEAFNSD LSNIEYGVTI LAKDGGKPSL2220
 2221 STSVELPITI VNKAMPVFDK PFYTASVNED IRMNTPILSI NATSPEGQGI IYIIIDGDPF2280
 2281 KQFNVDFDTG VLKVVSPLDY EVTSAYKLTI RASDALTGAR AEVTVDLLVN DVNDNPPIFD2340
 2341 QPTYNTTLSE ASLIGTPVLQ VVSIDADSEN NKMVHYQIVQ DTYNSTDYFH IDSSSGLILT2400
 2401 ARMLDHELVQ HCTLKVRSTD SGFPSLSSEV LVHIYISDVN DNPPVFNQLI YESYVSELAP2460
 2461 RGHFVTCVQA SDADSSDFDR LEYSILSGND RTSFLMDSKS GVITLSNHRK QRMEPLYSLN2520
 2521 VSVSDGLFTS TAQVHIRVLG ANLYSPAFSQ STYVAEVREN AAAGTKVIHV RATDGDPGTY2580
 2581 GQISYAIIND FAKDRFLIDS NGQVITTERL DRENPLEGDV SIFVRALDGG GRTTFCTVRV2640
 2641 IVVDENDNAP QFMTVEYRAS VRADVGRGHL VTQVQAIDPD DGANSRITYS LYSEASVSVA2700
 2701 DLLEIDPDNG WMVTKGNFNQ LKNTVLSFFV KAVDGGIPVK HSLIPVYIHV LPPETFLPSF2760
 2761 TQSQYSFTIA EDTAIGSTVD TLRILPSQNV RFSTVNGERP ENNKGGVFVI EQETGTIKLD2820
 2821 KRLDHETSPA FHFKVAATIP LDKVDIVFAV DVDIKVLDLN DNKPVFETSS YDTIIMEGMP2880
 2881 VGTKLTQVRA IDMDWGANGQ VTYSLHSDSQ PEKVMEAFNI DSNTGWISTL KDLDHETDPT2940
 2941 FTFSVVASDL GEAFSLSSTA LVSVRVTDIN DNAPVFAQEV YRGNVKESDP PGEVVAVLST3000
 3001 WDRDTSDINR QVSYHITGGN PRGRFALGLV QSEWKVYVKR PLDREEQDIY FLNITATDGL3060
 3061 FVTQAMVEVS VSDVNDNSPV CEQVAYTALL PEDIPSNKII LKVSAKDADI GSNGDIRYSL3120
 3121 YGSGNSEFFL DPESGELKTL ALLDRERVPV YSLMAKATDG GGRFCQANIH LILEDVNDNP3180
 3181 PVFSSDHYNA CIYENTATKA LLTRVQAVDP DVGINRKVVY SLADSAGGVF SIDSSSGIII3240
 3241 LEQPLDREQQ SSYNISVRAT DQSPGQSLSS LTTVTITVLD INDNPPVFER RDYLVTVPED3300
 3301 TSPGTQVLAV FATSKDIGTN AEITYLIRSG NEQGKFKINP KTGGISVSEV LDYELCKRFY3360
 3361 LVVEAKDGGT PALSAVATVN INLTDVNDNP PKFSQDVYST VISEDALVGD SVILLIAEDV3420
 3421 DSQPNGQIHF SIVNGDRDNE FTVDPVLGLV KVKKKLDRER VSGYSLLVQA VDSGIPPMSS3480
 3481 TATLNIDISD VNDNSPVFTP ANYTAVIQEN KPVGTSILQL VVTDRDSFHN GPPFSFSILS3540
 3541 GNEEEEFVLD SHGILRSAVV FQHTESPEYV LCVQAKDSGK PQQVSHTYIR VRVIEESTHK3600
 3601 PTAIPLEIFI VTMEDDFPGG VIGKIHATDQ DMYDVLTFAL KSEQKSLFKV NSHDGKIIAL3660
 3661 GGLDSGKYVL NVSVSDGRFQ VPIDVVVHVE QLVHEMLQNT VTIRFENVSP EDFVGLHMHG3720
 3721 FRRTLRNAVL TQKQDSLHII SIQPVAGTNQ LDMLFAVEMH SNEFYKPAYL IQKLSNARRH3780
 3781 LENIMRISAI LEKNCSGLDC QEQHCEQGLS LDSHALMTYS TARISFVCPR FYRNVRCTCN3840
 3841 GGLCPGSNDP CVEKPCPGDM QCVGYEASRR PFLCQCPPGK LGECSGHTSL SFAGNSYIKY3900
 3901 RLSENSKEED FKLALRLRTL QSNGIIMYTR ANPCIILKIV DGKLWFQLDC GSGPGILGIS3960
 3961 GRAVNDGSWH SVFLELNRNF TSLSLDDSYV ERRRAPLYFQ TLSTESSIYF GALVQADNIR4020
 4021 SLTDTRVTQV LSGFQGCLDS VILNNNELPL QNKRSSFAEV VGLTELKLGC VLYPDACERS4080
 4081 PCQHGGSCTG LPSGGYQCTC LSQFTGRNCE SEITACFPNP CRNGGSCDPI GNTFICNCKA4140
 4141 GLTGVTCEED INECEREECE NGGSCVNVFG SFLCNCTPGY VGQYCGLRPV VVPNIQAGHS4200
 4201 YVGKEELIGI AVVLFVIFIL VVLFIVFRKK VFRKNYSRNN ITLVQDPATA ALLNKSNGIP4260
 4261 FRNLRGSGDG RNVYQEVGPP QVPVRPMAYT PCFQSDSRSN LDKIVDGLGG EHQEMTTFHP4320
 4321 ESPRILTARR GVVVCSVAPN LPAVSPCRSD CDSIRKNGWD AGTENKAVDD PGEVTCFAGS4380
 4381 NKGSNSEVQS LSSFQSDSGD DNAYHWDTSD WMPGARLSDI EEVPNYENQD GGSAHQGSTR4440
 4441 ELESDYYLGG YDIDSEYPPP HEEEFLSQDQ LPPPLPEDFP DQYEALPPSQ PVSLASTLSP4500
 4501 DCRRRPQFHP SQYLPPHPFP NETDLVGPPA SCEFSTFTVS MNQGTEPTGP ADSVSLSLHN4560
 4561 SRGTSSSDVS ANCGFDNSEV AMSDYESVGE LSLASLHIPF VETQHQTQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle