YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109018100, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	210	0.99
Transmembrane Helix	211	233	0.93
Non-Cytoplasmic	234	257	0.91
Transmembrane Helix	258	277	0.92
Cytoplasmic	278	295	0.90
Transmembrane Helix	296	317	0.91
Non-Cytoplasmic	318	324	0.82
Transmembrane Helix	325	346	0.92
Cytoplasmic	347	385	0.98
Transmembrane Helix	386	406	0.70
Non-Cytoplasmic	407	413	0.61
Transmembrane Helix	414	436	0.76
Cytoplasmic	437	450	0.74
Transmembrane Helix	451	470	0.88
Non-Cytoplasmic	471	481	0.75
Transmembrane Helix	482	504	0.85
Cytoplasmic	505	522	0.85
Transmembrane Helix	523	543	0.60
Non-Cytoplasmic	544	553	0.63
Transmembrane Helix	554	576	0.79
Cytoplasmic	577	615	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSTSQLYTVK YKDGTELELK ENDIKPLTSF  60
   61 RQRKGGSTSS SPSRRRGSRS RSRSRSPGRP PKSARRSASA SHQANIKEAR REVEVKLTPL 120
  121 ILKPFGNSIS RYNGEPEHTE RNDVPHKNTQ EKFSLSQESS YISTQYSLRP RREEVKLKEI 180
  181 DSKEEKFIAK ELAVRTFEVT PIRAKDLEFG GVPGVFLIMF GLPVFLFLLL LICKQKDPSL 240
  241 LNFPPPLPAL YELWETRVFG VYLLWFLIQV LFYLLPIGKV VEGTPLIDGR RLKYRLNGFY 300
  301 AFILTSAVIG ASLFQGVEFH YVYSHFLQFA LGATVFCVVL SVYLYMRSLK APRNDLSPAS 360
  361 SGNAVYDFFI GRELNPRIGT FDLKYFCELR PGLIGWVVIN LVMLLAEMKI QDRAIPSLAM 420
  421 ILVNSFQLLY VVDALWNEEA LLTTMDIIHD GFGFMLAFGD LVWVPFIYSF QAFYLVSHPN 480
  481 EVSWPMASLI IVLKLCGYVI FRGANSQKNA FRKNPSDPKL AHLKTIHTST GKNLLVSGWW 540
  541 GFVRHPNYLG DLIMALAWSL PCGFNHILPY FYVIYFTMLL VHREARDEYH CKKKYGVAWE 600
  601 KYCQRVPYRI FPYIY