YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218202602
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.89
Transmembrane Helix	8	31	0.85
Cytoplasmic	32	45	0.79
Transmembrane Helix	46	65	0.91
Non-Cytoplasmic	66	71	0.82
Transmembrane Helix	72	94	0.91
Cytoplasmic	95	104	0.85
Transmembrane Helix	105	127	0.92
Non-Cytoplasmic	128	146	0.94
Transmembrane Helix	147	168	0.89
Cytoplasmic	169	265	0.99
Transmembrane Helix	266	289	0.78
Non-Cytoplasmic	290	305	0.77
Transmembrane Helix	306	324	0.91
Cytoplasmic	325	339	0.77
Transmembrane Helix	340	361	0.87
Non-Cytoplasmic	362	373	0.79
Transmembrane Helix	374	394	0.79
Cytoplasmic	395	402	0.75
Transmembrane Helix	403	426	0.88
Non-Cytoplasmic	427	428	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLSLLLVA SMPIVQVLLI GVIGAFLASG YSKILTSSAL RDMNKVVFTV FTPSLMFASL  60
   61 AKTVTLSDVI SWWFMPVNIG ITFIVGGTLG WIACKILKPP QHFRGMIIAF CSAGNLGNLL 120
  121 LIIVPAVCDE DGNPFGKDRS LCRSRGLSYS SLSMALGGLF IWTHTYSLMQ KAGKMYHKMQ 180
  181 SKSIQCPADS DEEHHPAQGH DQVKLDGETA YADEEAALLV SAKLAPEHNE ENQMEAPLLT 240
  241 CEREIANKGG FWTNLKETVH QVVEELMAPP TVSAILGFVV GLVPWLKSLV IGNGAPLRVI 300
  301 QESLQLMGNG TIPCITLILG GNLTQGLRKS VLKRTVIITI VCIRYVIQPL IGMAVVHAAY 360
  361 GVGFLPHDPL YRYVLMMQFA LPPAMNIGTM AQLFDVGQEE CSVIFLWTYL IAAIALTTWS 420
  421 TIFMSILS