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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115465835, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.82
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRPQLVPP LLSHRRRLVI PLLVLLLAAA ASDEQLLSLR GQAAVLVSIK DAFSPPLPTP  60
   61 LRTTWSIAND ASLCSSWHAV RCAPDNRTVV SLDLSAHNLS GELSSAIAHL QGLRFLSLAA 120
  121 NSLAGDLPPT IAALRHLRYL NLSNNQFNGT LHYYLSTMNS LEVLDVYDND LSGPLPLPDT 180
  181 NSNLRHLDLG GNFFSGSIPT SFGRLQAIQF LSVAGNSLSG RIPPELGNLT ALRQLYLGYY 240
  241 NQFDGGIPAS LGRLASLVHL DLASCGLQGE IPPSLGGLAN LDTLYLQTNQ LNGTIPPALA 300
  301 NLTALRFLDV SNNALTGEIP PELAALTHLR LLNMFINRFR GGIPEFIADL RSLQVLKLWQ 360
  361 NNFTGSIPGA LGRVAPLREL DLSTNRLTGE VPRWLCALRK LDILILLDNF LFGPVPEGLG 420
  421 ACRTLTRVRL ARNYLTGPLP RGFLYLPALT TLELQGNYLT GQLHNEDEDA GSPLSLLNLS 480
  481 GNRLNGSLPA SIGNFSSLQT LLLSGNHFTG EIPPEVGQLR RLLKLDLSGN NLSGEVPGEV 540
  541 GECASLTYLD LSANQLWGAM PARVVQIRML NYLNVSWNKL NGSIPAEMGS MKSLTDADLS 600
  601 HNDFSGHVPH NGQFAYFNAS SFAGNPRLVL CGTPAPGPAP GTTTPGSGGD GRAPVMWLAA 660
  661 ALGLLACSVA FAAAAVATTR SAIERRRRSG WQMRAFQKVR FGCEDVMRCV KENSVVGRGG 720
  721 AGVVYAGEMP GGEWVAVKRI VDGGFSAEVQ TLGRIRHRHI VRLLAMCWSA EAKLLVYEYM 780
  781 AGGSLGDALH GHHRHHDEYD DDGSNTNIIG SLLLPWAARL RVATEAAKGL CYLHHDCSPP 840
  841 ILHRDVKSNN ILLDARLEAH VADFGLAKYL RAGASECMSA IAGSYGYIAP EYAYTLKVDE 900
  901 KSDVYSFGVV LLELITGQKP VGEHLQLHQE EEEEANTTTT VVDLVQWVRA RCGSGKDGVW 960
  961 RVLDRRLGGD VPAAEATHMF FVAMLCVQEH SVERPTMRER CFLSGRCVHR ASPPPWLPRP1020
 1021 SSLTMSTSSA TSATTDSATV LSSTSTVAPV FVNPYATVAV KSHVPISLEL HNPNYNKWKA1080
 1081 FFRSMCGKFG LLDHLDAAPP ANPDAAWEQA DCCLCSWLFG SVADDVLDLA MEHDQSAQDL1140
 1141 WIAIDNLFQA NKEPRAIYPH HEFHSMTQGD LSVADYCQRM KTAADALRDV GHPVTESQLV1200
 1201 LNLLRGVNSR FTSTADNIAS APILSSFASA RNMLVLKELR NTNSVQVQSE TALVAANNAH1260
 1261 SNCTGGTCHS SGSGGQQQNR AGGSKNKGKN GGRPGGQNNG SNSFGTSTFS IPAPRQAAPW1320
 1321 VCFSPWAGQQ QPWRAPSAEI LGPYP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle