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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113547417, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.15
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSARHLFFT LSFSFLALLS CIAVCNAGDE AAALLAIKAS LVDPLGELKG WSSAPHCTWK  60
   61 GVRCDARGAV TGLNLAAMNL SGAIPDDILG LAGLTSIVLQ SNAFDGELPP VLVSIPTLRE 120
  121 LDVSDNNFKG RFPAGLGACA SLTHLNASGN NFAGPLPADI GNATALETLD FRGGFFSGGI 180
  181 PKTYGKLQKL KFLGLSGNNL NGALPAELFE LSSLEQLIIG YNEFSGAIPA AIGNLAKLQY 240
  241 LDMAIGSLEG PIPPELGRLP YLNTVYLYKN NIGGQIPKEL GNLSSLIMLD LSDNAITGTI 300
  301 PPELAQLTNL QLLNLMCNKI KGGIPAGIGE LPKLEVLELW NNSLTGPLPP SLGKAQPLQW 360
  361 LDVSTNALSG PVPAGLCDSG NLTKLILFNN VFTGAIPAGL TTCSTLVRVR AHNNRLNGTV 420
  421 PLGLGRLPRL QRLELAGNEL SGEIPDDLAL STSLSFIDLS HNQLRSALPS NILSIPALQT 480
  481 FAAADNELTG GVPDELADCP SLSALDLSNN RLSGAIPASL ASCQRLVSLS LRNNRFTGQI 540
  541 PAAVAMMPTL SVLDLSNNFF SGEIPSNFGS SPALEMLNLA YNNLTGPVPA TGLLRTINPD 600
  601 DLAGNPGLCG GVLPPCGASS LRSSSSESYD LRRSHMKHIA AGWAIGISAV IAACGAMFLG 660
  661 KQLYHRWYVH GGCCDDAAVE EEGSGSWPWR LTAFQRLSFT SAEVLACIKE ANIVGMGGTG 720
  721 VVYRADMPRH HAVVAVKKLW RAAGCPEEAT TVDGRTDVEA GGEFAAEVKL LGRLRHRNVV 780
  781 RMLGYVSNNL DTMVIYEYMV NGSLWDALHG QRKGKMLMDW VSRYNVAAGV AAGLAYLHHD 840
  841 CRPPVIHRDV KSSNVLLDDN MDAKIADFGL ARVMARAHET VSVVAGSYGY IAPEYGYTLK 900
  901 VDQKSDIYSF GVVLMELLTG RRPIEPEYGE SQDIVGWIRE RLRSNTGVEE LLDASVGGRV 960
  961 DHVREEMLLV LRVAVLCTAK SPKDRPTMRD VVTMLGEAKP RRKSSSATVA ATVVDKDKPV1020
 1021 FTTSPDSGTL GRRRPHAVRA AASPASAPSG PPPLLPPPPS DPAEARSGRL SPRHPGRRSS1080
 1081 RRRRVRAAAA SKLPDLAVRA AAPPATAAAG SGGGEVRLAS SQIQLQTKTK SQSKFKYKYK1140
 1141 SESIDNERRW RGEREAAASP RRTSSSADPP LRRDPLSRRC AAREPPTRRC AEKSPDLARS1200
 1201 RSAGVTPMRR SGAAGGEGRG EATLVREGRG GSAGGGGGGR AREGGGRDGR GEVVVGEERG1260
 1261 KMAEVKEGRG KVAVGEGRGE VAVGEGHGEV AVGKGRGEDG GGGGGAQSPV GREWPTVGGG1320
 1321 RGKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle