YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169778773
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.92
Transmembrane Helix	137	157	0.88
Non-Cytoplasmic	158	162	0.67
Transmembrane Helix	163	182	0.79
Cytoplasmic	183	510	0.97
Transmembrane Helix	511	535	0.89
Non-Cytoplasmic	536	554	0.89
Transmembrane Helix	555	579	0.80
Cytoplasmic	580	1130	0.98
Transmembrane Helix	1131	1149	0.92
Non-Cytoplasmic	1150	1159	0.84
Transmembrane Helix	1160	1181	0.89
Cytoplasmic	1182	1210	0.94
Transmembrane Helix	1211	1233	0.89
Non-Cytoplasmic	1234	1249	0.89
Transmembrane Helix	1250	1270	0.86
Cytoplasmic	1271	1276	0.81
Transmembrane Helix	1277	1297	0.92
Non-Cytoplasmic	1298	1312	0.81
Transmembrane Helix	1313	1337	0.83
Cytoplasmic	1338	1516	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNHLAPPE NVLPGSEIQE VNSNISHPTK RQRWATQRVH GAGGVRKRVS IMDRFNKRSE  60
   61 MKDEKRKSTS SNLPTAENPN AEGDAEASNR RIYFNIPIPE SERDEDGHPK AYYPRNKIRT 120
  121 AKYTPLSFVP KNIWLQFHNI ANIYFLFIII LGFFSIFGVD TPALNTVPLI VIVVVTAIKD 180
  181 AIEDWRRTVV DNEVNNSPVY RLIDWNNVNS VEDNVSLWRR FKKACTRATI WTYRAIKGLA 240
  241 QKNKKQHDPE EADRRASFMT TVTPRASVYS QRGDGGLADE AIQMTPVPSP TPEARPDWTH 300
  301 AVDEQSQYLH PDKARDSVAV PAYTATSPKK GGSVVDMSKP IIGKARFKRD YWKSVQVGDY 360
  361 VRLYNGDPVP ADVVVLSTSD PDGACYVETK SLDGETNLKV RQALNCGRQV RHARDCERAE 420
  421 FVIDSEAPHP NLYAYNGAVR WDQRDPDFPD APRKEMIEPI TINNILLRGC SLRNTEWALG 480
  481 VVLFTGDETK IMLNSGVTPS KRARLAKDLN WNVIYNFIIL FFMCLISGIV NGVAWSSTNR 540
  541 SLNYFDLKSY GSTPAVTGII TFWVALILFQ NLVPISLYIS LEIVRTIQAV FIHSDVFMYY 600
  601 EKLQIYCVPK SWNISDDVGQ IEYIFSDKTG TLTQNVMDFK KCTVNGISYG EAFTEAQVGM 660
  661 VRREGGDADA VAARERERIA MDTTKMLELL RKIHDNPYLR DERLTFVSSN YVADLGGQSG 720
  721 DAQRKATEHF MLALAVCHTV ITEHTPGDPP QIEFKAQSPD EAALVGTARD CGFTLLGRSG 780
  781 DDLVLNVMGE ERTYTVLNTL EFNSSRKRMS AIIRMPDGHI RLFCKGADSI IYSRLAPGKQ 840
  841 QELRKKTAEH LEMFAREGLR TLCVADRVLS EEEYKAWSKE HDIAAAALTD REEKLEEVSS 900
  901 NIEQELMLIG GTAIEDRLQD GVPDTISLLA DAGIKLWVLT GDKVETAINI GFSCNLLDND 960
  961 MELIVFNIPG NESHRAAQEL DQQLQRFGLT GSDEELLAAR QDHTPPEPTH AVVIDGETLK1020
 1021 LMLDDELKQK FLLLCKQCKS VLCCRVSPAQ KAAVVRMVKN GLDIMALSIG DGANDVAMIQ1080
 1081 EADVGVGIIG EEGRQAAMSS DYAIGQFRFL QRLILVHGRW SYRRMAETIA NFFYKNLVWT1140
 1141 IALFWYSIYN DFDGSYLFDY TYIVLVNVAF TSLPVILMGI FDQDVDDKVS LAVPQLYMRG1200
 1201 IERKEWSQLK FWLYMADGLY QSLICFFMPY LLYSRATFQT ANGLDIADRT RMGVLVATSA1260
 1261 VIASNTYIML NSYRWDWLTT LINVISSLLI FLWTGIYSSV DASAQFYKSG AQVYGTLSFW1320
 1321 VVLLLTVTIC LLPRFTFKAF QKVFFPLDVD IIREQVTQGK FKFLEQYEAF VPPKAASAAA1380
 1381 SGQLLSDESA ASSDLGKPMQ PSMKQDPFSD DQQIYTPSVA PTSRTHQTHN HRSQNGSNGT1440
 1441 NYASSLDTTQ HYHTQPVDYV RGSAERTRHS FDRVRHDFEA NNELTRVETG LTSGAQEPQS1500
 1501 PHSPLKAPYD PPSHSS