YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92896783
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	479	0.72
Transmembrane Helix	480	498	0.94
Non-Cytoplasmic	499	514	0.89
Transmembrane Helix	515	537	0.90
Cytoplasmic	538	550	0.92
Transmembrane Helix	551	572	0.93
Non-Cytoplasmic	573	595	0.93
Transmembrane Helix	596	617	0.96
Cytoplasmic	618	667	0.83
Transmembrane Helix	668	688	0.82
Non-Cytoplasmic	689	692	0.68
Transmembrane Helix	693	713	0.85
Cytoplasmic	714	1473	0.71
Transmembrane Helix	1474	1497	0.89
Non-Cytoplasmic	1498	1525	0.68
Transmembrane Helix	1526	1549	0.76
Cytoplasmic	1550	1559	0.56
Transmembrane Helix	1560	1582	0.67
Non-Cytoplasmic	1583	1642	0.46
Transmembrane Helix	1643	1667	0.87
Cytoplasmic	1668	1714	0.74
Transmembrane Helix	1715	1734	0.65
Non-Cytoplasmic	1735	1751	0.79
Transmembrane Helix	1752	1774	0.88
Cytoplasmic	1775	1788	0.86
Transmembrane Helix	1789	1808	0.95
Non-Cytoplasmic	1809	1815	0.74
Transmembrane Helix	1816	1836	0.93
Cytoplasmic	1837	1855	0.87
Transmembrane Helix	1856	1878	0.90
Non-Cytoplasmic	1879	1914	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSRGPT PSEPPPRRLV RTQTAGNLGE SIFDSEVVPS SLVEIAPILR VANEVEKTHP  60
   61 RVAYLCRFYA FEKAHRLDPT SSGRGVRQFK TALLQRLERE NDPTLKGRVK KSDAREMQSF 120
  121 YQHYYKKYIQ ALQNAADKAD RAQLTKAYQT ANVLFEVLKA VNMTQSMEVD REILETQDKV 180
  181 AEKTEILVPF NILPLDPDSA NQAIMKFPEA QSLSGLPWPN DYKKKKDEDI LDWLGSMFGF 240
  241 QKHNVANQRE HLILLLANVH IRQFPNPDQQ PKLDECALTE VMKKLFKNYK KWCKYLDRKS 300
  301 SLWLPTIQQE VQQRKLLYMG LYLLIWGEAA NLRFMPECLC YIYHHMAFEL YGMLAGNVSP 360
  361 MTGENIKPAY GGEDEAFLRK VVTPIYNVIA EEAKKSKRGR SKHSQWRNYD DLNEYFWSAD 420
  421 CFRLGWPMRA DADFFCLPAE RVVFDKSNDD KPPNRDGWFG KVNFVEIRSF WHLFRSFDRM 480
  481 WSFFILCLQA MIIVAWNGSG DPTVIFHGDV FKKVLSVFIT AAILKFGQAV LGVILSWKAR 540
  541 RSMSLYVKLR YILKVISAAA WVILLSVTYA YTWDNPPGFA ETIKSWFGSN SSAPSLFIVA 600
  601 VVVYLSPNML AAIFFMFPFI RRYLERSNYR IVMLMMWWSQ IKPLVGPTKA IMKVKISTFQ 660
  661 WHEFFPHGTR NNIGVVVVLW APIILVYFMD TQIWYAIFST LFGGIYGAFR RLGEIRTLGM 720
  721 LRSRFQSLPG AFNASLIPEE STDEPRKKGL KATLSRRFTE IPSNKGKKAA RFAQLWNQII 780
  781 TSFREEDLIN DSEMDLLLVP YWADTQLDLI QWPPFLLASK IPIALDMAKD SNGKDRELTK 840
  841 RIEADNYMSC AVRECYASFK SIIMHLVRGE REKPFIEYMF GEVDSHIEAG TLIKEFRMSA 900
  901 LPSLYGQFVQ LIQYLLVNNQ KDRDQVVILF QDMLEVVTRD IMMEDQDQIF SLIDSSHGGV 960
  961 GHEGMFPLEP EPHHQLFASE GAISFPIEPV TAAWTEKIKR LFLLLTTKES AMDVPSNLEA1020
 1021 RRRISFFSNS LFMDMPVAPK VRNMLSFSIL TPYYTEEVLF SLLDLDSPNE DGVSILFYLQ1080
 1081 KIFPDEWTNF LQRVKCSSEE ELKGNESEEL EEELRLWASY RGQTLTRTVR GMMYYRKALE1140
 1141 LQAFLDMAKD EDLMEGYKAM ENSDDNSRGE RSLWTQCQAV ADMKFTYVVS CQQYGIDKRS1200
 1201 GSPRAHDILR LMTRYPSLRV AYIDEVEEPI KNSKKKINKV YYSCLVKAMP KSSSSSEPEQ1260
 1261 NLDQVIYKIK LPGPAILGEG KPENQNHAII FTRGEGLQTI DMNQDNYMEE ALKMRNLLQE1320
 1321 FLKKHDGVRF PSILGLREHI FTGSVSSLAW FMSNQETSFV TIGQRLLANP LRVRFHYGHP1380
 1381 DVFDRLFHLT RGGVSKASKV INLSEDIFAG FNSTLREGSV THHEYIQVGK GRDVGLNQIS1440
 1441 MFEAKIANGN GEQTLSRDVY RLGHRFDFFR MLSCYFTTVG FYFSTLITVL TVYIFLYGRL1500
 1501 YLVLSGLEEG LSAQKAIRDN KPLQVALASQ SFVQIGFLMA LPMLMEIGLE RGFRTALSEF1560
 1561 ILMQLQLAPV FFTFSLGTKT HYFGRTLLHG GAKYRPTGRG FVVFHAKFAD NYRLYSRSHF1620
 1621 VKGIELLVLL VVYEIFSHSY RSAVAYILIT VSMWFMVGTW LFAPFLFNPS GFEWQKIVDD1680
 1681 WTDWNKWISN RGGIGVPPEK SWESWWEEEQ DHLQYSGIRG IIVEILLSLR FFIYQYGLVY1740
 1741 HLNITKKGSK SFLVYGISWL VIFVILFVMK TVSVGRRKFS ANFQLVFRLI KGMIFVTFIA1800
 1801 ILVILIALPH MTPQDIIVCI LAFMPTGWGM LQIAQALKPI VRRAGFWGSV KTLARGYEIV1860
 1861 MGLLLFTPVA FLAWFPFVSE FQTRMLFNQA FSRGLQISRI LGGQRKERAS RSKE