YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92876670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.93
Transmembrane Helix	68	89	0.83
Non-Cytoplasmic	90	97	0.82
Transmembrane Helix	98	117	0.73
Cytoplasmic	118	246	0.85
Transmembrane Helix	247	267	0.92
Non-Cytoplasmic	268	281	0.72
Transmembrane Helix	282	305	0.88
Cytoplasmic	306	649	0.83
Transmembrane Helix	650	671	0.94
Non-Cytoplasmic	672	677	0.73
Transmembrane Helix	678	696	0.90
Cytoplasmic	697	713	0.91
Transmembrane Helix	714	736	0.93
Non-Cytoplasmic	737	756	0.95
Transmembrane Helix	757	775	0.92
Cytoplasmic	776	786	0.79
Transmembrane Helix	787	808	0.93
Non-Cytoplasmic	809	817	0.79
Transmembrane Helix	818	837	0.91
Cytoplasmic	838	952	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESKSISLE QIKNETVDLE RIPVEEVFEQ LKCTKEGLSS EEGANRLQIF GPNKLEEKKD  60
   61 SKILKFLGFM WNPLSWVMEA AALMAIGLAN GNGKPPDWQD FVGIICLLVI NSTISFIEEN 120
  121 NAGNAAAALM AGLAPKTKVL RDGKWSEQEA AILVPGDIIS IKLGDIVPAD ARLLEGDPLK 180
  181 IDQSALTGES LPVTRNPGDE VYSGSTCKQG ELEAVVIATG VHTFFGKAAH LVDSTNQVGH 240
  241 FQKVLTAIGN FCICSIAVGM LAEIIVMYPI QHRKYRDGID NLLVLLIGGI PIAMPTVLSV 300
  301 TMAIGSHRLS QQGAITKRMT AIEEMAGMDV LCSDKTGTLT LNKLSVDKNL IEVFEKGVDK 360
  361 EHVMLLAARA SRVENQDAID AAIVGTLADP KEARAGVREI HFLPFNPVDK RTALTYIDGN 420
  421 GNWHRASKGA PEQIMDLCKL REDTKRNIHA IIDKFAERGL RSLAVARQEV PEKTKESPGA 480
  481 PWQFVGLLSL FDPPRHDSAE TIRRALHLGV NVKMITGDQL AIAKETGRRL GMGTNMYPSA 540
  541 TLLGQDKDAN IAALPVEELI EKADGFAGVF PEHKYEIVRK LQERKHICGM TGDGVNDAPA 600
  601 LKRADIGIAV ADATDAARGA SDIVLTEPGL SVIISAVLTS RAIFQRMKNY TIYAVSITIR 660
  661 IVFGFMFIAL IWKFDFSPFM VLIIAILNDG TIMTISKDRV VPSPLPDSWK LKEIFATGIV 720
  721 LGGYLALMTV IFFWAMKEND FFPDKFGVRK LNHDEMMSAL YLQVSIVSQA LIFVTRSRGW 780
  781 SFLERPGALL VIAFFIAQLI ATIIAVYANW GFAKVQGIGW GWAGVIWLYS IVFYIPLDVM 840
  841 KFAIRYILSG KAWNNLLDNK TAFTTKKDYG KEEREAQWAH AQRTLHGLQP PESSGIFNEK 900
  901 SSYRELSEIA EQAKRRAEVA RLRELHTLKG HVESVVKLKG LDIDTIQQHY TV