YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92870291
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLRKKLSL PIIITTICIL LFSIVLFAER LSFISSTSIF KFKTCPRKHI KSKSNDRKIE  60
   61 DVVLNASWID DRFDFDPEEC NVANGKWIFN SSIKPLYSDK SCPYIDKQFS CVKNGRNDSD 120
  121 YLHWEWQPED CTLPQFNPEI ALKKLEGKRL LFVGDSLQRN QWESFVCLVQ GIIPEKEKSM 180
  181 KRGRVRSVFK AKEYNATIEF YWAPFLVESN TDIHIIGDPK KRIIKVDEIT ERAKNWTGAD 240
  241 ILVFNTYVWW MSGLRVKALW GSFSNGEEGY EELDTSIAYN LGLRTWANWV DSTINPNKTR 300
  301 VFFTTMSPAH TKSADWGNKN GTKCFNETRP VKKKNHWGSG SNKGMMSVVA KVIKKMKVPV 360
  361 TVINITQISE YRIDGHSSVY TETGGKLLNE EERTNPLNAD CIHWCLPGVP DTWNQIFFAM 420
  421 L

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	28	0.54
Non-Cytoplasmic	29	421	0.99