YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEKDLSPN SPRIRKLRDT SYPTTPTSRM NTNNQRDNHY PNIPNSPRDY NYTPSSPTAR  60
   61 IRHRRRSSEN LAEVNRSNVS RVSNLLLGDK NKYRSMWIRT CSSLWMLGGV VFIIYMGHLY 120
  121 IWAMVVVIQI FMAKELFFLR RRAHEERRLP GFWLLNWHFF FTAMLFVYGR IIQQQLVNTV 180
  181 SSDRFIYKLV SGLIKYQMVI CYFLYIAGLI WFILTLKNKM YKYQFGQYAW THMILIVVFT 240
  241 QSSFTVANIF EGIFWFLLPA ALIAMNDVAA YFFGFYFGKT PLIKLSPKKT WEGFIGASVA 300
  301 TIISAFIFAN VLGQFQWLTC PRKDLSTGWL HCDPGPLFRP EYYPFPSWIT PFSPWKGIST 360
  361 LPVQWHAFSL GLFASIMAPF GGFFASGFKR AFKIKDFGDS IPGHGGFTDR MDCQMVMAVF 420
  421 AYIYIQSFIV NRDYSVEMIL DQISRSLGHE EQKMLYEKLG DILQHKLQGR F

Type	Start	End	Confidence
Cytoplasmic	1	95	0.95
Transmembrane Helix	96	115	0.92
Non-Cytoplasmic	116	119	0.73
Transmembrane Helix	120	138	0.94
Cytoplasmic	139	151	0.88
Transmembrane Helix	152	172	0.93
Non-Cytoplasmic	173	192	0.96
Transmembrane Helix	193	215	0.91
Cytoplasmic	216	227	0.86
Transmembrane Helix	228	247	0.93
Non-Cytoplasmic	248	254	0.71
Transmembrane Helix	255	277	0.91
Cytoplasmic	278	290	0.90
Transmembrane Helix	291	312	0.88
Non-Cytoplasmic	313	364	0.95
Transmembrane Helix	365	385	0.94
Cytoplasmic	386	471	0.88