YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91089229
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	579	0.94
Transmembrane Helix	580	598	0.59
Cytoplasmic	599	674	0.61
Transmembrane Helix	675	697	0.91
Non-Cytoplasmic	698	709	0.75
Transmembrane Helix	710	731	0.81
Cytoplasmic	732	739	0.84
Transmembrane Helix	740	762	0.91
Non-Cytoplasmic	763	768	0.84
Transmembrane Helix	769	790	0.92
Cytoplasmic	791	821	0.97
Transmembrane Helix	822	842	0.93
Non-Cytoplasmic	843	876	0.90
Transmembrane Helix	877	896	0.91
Cytoplasmic	897	907	0.80
Transmembrane Helix	908	926	0.95
Non-Cytoplasmic	927	932	0.83
Transmembrane Helix	933	952	0.92
Cytoplasmic	953	962	0.76
Transmembrane Helix	963	986	0.88
Non-Cytoplasmic	987	999	0.81
Transmembrane Helix	1000	1020	0.93
Cytoplasmic	1021	1048	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILNCPLCC HETFETAATL KNHILTILDN LLCPTCGKKF EKLADLAQHL DDNDCQGGDA  60
   61 PAEGQYYCQM CDLHLDDIDE HLRQSHEGQE ILLEEEDADC GEVPLDGTTI FVLNPDEPDL 120
  121 EGDPLTGDSP QVPPLKKSAT VGQVDVKDRD GRPYTRKFVK IDKFWMQDDA NASEPPNTER 180
  181 LIEISKCDEC DMYVPHLDGV YQPHECKKPS NPLEIYICEV CNTNFPTFKS LRLHRRMHEP 240
  241 IKARHADTPA NHDEEVRPMF ICKICNKTYD KEYEAVHLES HRPENGFNCD ICNRKFHTKS 300
  301 NLEMHIKAHS NNKKFTCSYC KKPFVTYDAL NEHLLNQCQK RAYACQFCGR RFARPHEKVK 360
  361 HERIHTGEKP HVCEICGKAF RVSYCLTLHM RTHSGTRPYQ CTHCGKRFKS HSVYNHHLLT 420
  421 HSDVRAYQCP YCPKAFKTGV QLAGHKNSHT KPFTCTECNR PFASLYSVRA HMESHKTNNN 480
  481 LKYECWMCGA LYSRAFALKD HLKQQHEQEG DKGKGESGAD EELEAASSIL VNEEDIILGL 540
  541 EAAPNIEIIE GEEGFNLSVN TKFHSGYQPS LSVFLIPQRY VLGVMGFLAI VNAYTMRVTL 600
  601 SVAITEMVEP SKASTHYDPD SCPGSLANTS SVTNSDKLYP WTSTQQGLIL SSFYWGYVIT 660
  661 HIPGGMIAER FGGKYSLGLG ILCTAIFTFI TPFVIYASDG HWGWVVFVRV IEGLGEGTTF 720
  721 PALNVLLAQW VPLHERSKIG TLVFAGSQIG TVAGNAISGA LISVTQDWAS VFYVFGALAI 780
  781 LWVFLWMVLC YPDPETHPFI SDEEKEYLRK HIAHVTRKKR QVPWYSIMTS APVLALIAAQ 840
  841 IGHDWGFFTM VTDLPKYMKD VLKFNVAQNG VWSSVPYIFM WLVSMTSGWV CDHLVAKRYL 900
  901 SVTLARKIFT TIASMGPAIF IIAASYSGCD RDLAVVMFTI AMSFMGSFYC GMKVNALDLA 960
  961 PNFAGTLMAI VNGIGAITGI IVPYLVGALT EDHTLMQWRV VFWIAFGVFA VTNLIFVVFA1020
 1021 SGEVQSWNED LTDQKEMDLR KEQSAEKA