YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91078244
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	688	0.72
Transmembrane Helix	689	709	0.76
Non-Cytoplasmic	710	732	0.90
Transmembrane Helix	733	755	0.87
Cytoplasmic	756	761	0.86
Transmembrane Helix	762	781	0.93
Non-Cytoplasmic	782	786	0.79
Transmembrane Helix	787	809	0.89
Cytoplasmic	810	819	0.86
Transmembrane Helix	820	840	0.93
Non-Cytoplasmic	841	846	0.79
Transmembrane Helix	847	866	0.96
Cytoplasmic	867	927	0.98
Transmembrane Helix	928	951	0.87
Non-Cytoplasmic	952	964	0.83
Transmembrane Helix	965	987	0.88
Cytoplasmic	988	993	0.94
Transmembrane Helix	994	1016	0.93
Non-Cytoplasmic	1017	1022	0.95
Transmembrane Helix	1023	1047	0.88
Cytoplasmic	1048	1061	0.84
Transmembrane Helix	1062	1082	0.84
Non-Cytoplasmic	1083	1091	0.84
Transmembrane Helix	1092	1112	0.94
Cytoplasmic	1113	1144	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSDVPAVA WKVDKKNSAS EPDLKTAGRK LKSGFPPGIT VDELWLYRRK RPSENLWPND  60
   61 NLKPREGSFK LLKSEYRRRF KDFRSCDNLR EEISPVRNVK PDDHLKLEGS YELQPLYKEN 120
  121 FIQYPIERPV HRPTTSSFQI IDLSENEMRE NSRENERLLT EIRSRYPPYP YQERPPLIKR 180
  181 ETNLKLEGDL YTTTEKAEKF IQYLLTNKPP LMKKPTTLKL EGEMDINTEN REKYVPYEIA 240
  241 PRPPLCKKFT NLHLEGDLNI LTEKQEKFIR YDVQKRPPLT KKHTNLVIEG DLELLPEYRR 300
  301 EFIEYKTERP KLALPVNNLK TDGFYDVTPD VSVAFQQQIH PQIPNLRGGE GHEDMTLRTR 360
  361 LGRTTRENSL VDGPLETDES AKITNHLHLE GRIDLNPEYR NAYIDFNKEV SAPRTRRRGP 420
  421 ESHLKSEGKM DITPEYKCSY VDFPRTRPQI DHMTEKNEKY VPFANVPRTG PLKRDTELKL 480
  481 EGNIECQPEY RKAYIDYLIR ERVERKPRPL DNLGQPPRRI IEEEPLEKTL IHAQIPTVKE 540
  541 EPQKRPKSTR NRSLSQIETS VFGPKLTVPE KPQSRSSSPK PPSRRRSRTV PRNVSNSSDS 600
  601 DVPSRKHKTF GKPVLVENLA SRSTTPVLPM IDVSARNKWM RDSSVESSSA FVVLDKNFPV 660
  661 YRMAEKTGVS TNNLVEAGDY GKSKKLPQYI AALSVCMGSV AAGTVLGWTG NITKENLANR 720
  721 TLNDIYVDPD NDYGWIGSFS TLGALCMCFP IGFICDLIGR KLAMLLTIIP FSVGWLLIIF 780
  781 ADSTAMIFAG RFLTGLAGGA FCVSAPMYTS EIAEKDIRGA LGSYFQLLLT VGILFAYLLG 840
  841 AFLKPQIVSI ICACVPLVFG VVFFLQPETP VYSLKKGNEE AAIKALRKLR GDEYNVEAEI 900
  901 ADIKANIEKD EREKIPLSKS LETRAAKISL LICFGLMFFQ QLGGINAVIF YVGTIFEEAD 960
  961 SGLSASDVTI LVGVMQVIAT FVSSLVIDKF GRKILLLISG FIMSIAGILI GIYFSLKDDV1020
 1021 SDIGFLPILG VCIFIIVFSL GFGPIPWMIS SEVFPAEIKS NASSAAGTFN WFLAFLVTKF1080
 1081 YGDLAAEIGK DVTFYIFAGI SLVGVVFIFF VIPETKGKTL DEIQRELNGE KNVGQGIDNQ1140
 1141 GFNS