YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pgp-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.94
Transmembrane Helix	90	111	0.90
Non-Cytoplasmic	112	139	0.88
Transmembrane Helix	140	160	0.88
Cytoplasmic	161	214	0.95
Transmembrane Helix	215	234	0.93
Non-Cytoplasmic	235	238	0.82
Transmembrane Helix	239	260	0.89
Cytoplasmic	261	313	0.96
Transmembrane Helix	314	341	0.81
Non-Cytoplasmic	342	355	0.84
Transmembrane Helix	356	379	0.87
Cytoplasmic	380	760	0.97
Transmembrane Helix	761	787	0.77
Non-Cytoplasmic	788	805	0.77
Transmembrane Helix	806	830	0.80
Cytoplasmic	831	886	0.88
Transmembrane Helix	887	903	0.92
Non-Cytoplasmic	904	909	0.50
Transmembrane Helix	910	933	0.82
Cytoplasmic	934	1026	0.68
Transmembrane Helix	1027	1045	0.59
Non-Cytoplasmic	1046	1324	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPQENTDGS GKNLSSLRTK IDFDEKISAT SFSDSSYNDD DNDKKVEYYP SVFEKFVNFL  60
   61 LCRCDLSEQV LEFQPVSLLQ LFRFATTFDY ILLLIGLITS VISGVSQPVL AIISGRMTNV 120
  121 LLVIDPLSKE FKTKTMENVY IFLGLGIFVS INDFCQYMCF QRVCSRMMTV MRNRYISSIL 180
  181 RQNAGWFDKN LSGTITTRLN DNMERIQDGV GDKLGVLIRG ISMVIASVVI SLIYEWRLAL 240
  241 MMLGLIPVST ICMTLLSRFL EKSTGEELEK VGEAGAIAEE CLMGVRTIQA FNGQEEMVAK 300
  301 YEKQLNSGKK HAIWGGFWSG FFGGIFFFWL MAFMGCGILY GGYLLKVGII KSPGDVFIIV 360
  361 VAMLLGAYFL GLISPHLMVL LNARVAAASI YKTIDRVPKI DPYSRHGKKI EKVVGKVTFE 420
  421 NVHFRYPTRK EAKVLNGLNL TVEPGTSVAL VGHSGCGKST SVGLLTRLYE PEQGSVQIDG 480
  481 VDVRDLNLEW LRNVVGIVQQ EPILFNDTIH NNLLFGNPDA TRETMIRVCK MANAHDFIKK 540
  541 MPKGYDTQIG DGGVQLSGGQ KQRVAIARTL IRDPKVLLLD EATSALDAQS ESVVQSALNN 600
  601 ASKGRTTIMI AHRLSTIREA DKIVFFEKGV IVEAGNHEEL VNLGGRYFDL VKAQAFKQDP 660
  661 DEIALEKEEE DQFDEFDKPT VFNRKVSVRN SRSSGRSGSE EFRRGSLANH SFDRFRKASH 720
  721 IPSAEDEAFA LRVKETMEKD GEITAGFLDI FKNAQGRNYT YMLIGLSAAL IRGLDLPTFA 780
  781 LLFAWVFEGF EFVPYGGKMM HRLAMSVIAH CAAGLGIWFF QTLSTVMFAI VSENLGVRFR 840
  841 VAAFRNLLYQ DAAYFDNPAH APGSLITRLA ADPPCVKAVV DGRMMQVVYA TAAVIACVTI 900
  901 GFINCWQVAI LGTALIFLLG FIMAGLAFKI SIVAAEHMEN DDAGKIAIEI IENVKTIQLL 960
  961 TRTRRFLNSY ENESKKRKRT ELRKSVYEAV NYCISQNFMY YMSCFCFALA IRIINQGDQT1020
 1021 VDKTFRCLMA MMLCCEGIIM SAQFFPQFVG AKSAAGQMFN LINRQPQTGD LKSGTKPEIR1080
 1081 GNILFENVKF SYPQRPHQPV MKQLQWTALR GQTVALVGPS GSGKSTCIGM LERFYDVTGG1140
 1141 ALRMDGQDIK NISLYHLRTQ MALVGQEPRL FVGTIRENVC LGLKDVPLEK INQALELANA1200
 1201 NRFLGNLPDG IDTEVGERGG QLSGGQKQRI AIARALVRDP KILLLDEATS ALDSESERAV1260
 1261 QEALDRAREG RTCITIAHRL SSIQNSDLIV YIDDGRVQES GTHKELMQLK GKYFELIKKQ1320
 1321 DLAI