YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733306
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHQRTLHNRS LITMLPAEIE KRTETETSRH SSRSARIKRE PSPSAKERKT KAAKSVKLQE  60
   61 PHKRKEKLVT TEEEEEAKDA QIISSSTVVN VDSVRERIKE EREELLALLE TEGPGEGLKK 120
  121 KYLGVCELLL IVLVLSVVIL FLPISVWFCV KIVREHERAV KFRLGHLLKK RPRGPGLMFY 180
  181 LPFLDVCHIV DIRLQILKIP PHMVVTKDLV CTEVTAVCYY RIENVSVCYS SFASIPDVMQ 240
  241 ALTQVSVREI LAHHAFNDIL LDRKRIAQEI QVTLDSGTCR WGIKVEKAEI EEINLPPELQ 300
  301 HNFAVEAEAR RQAQVKVRVI AAEGEKAACE ALKASVESVS GSPLVMHLRL LQLLHSLRSE 360
  361 QPAVVLNIPP DVLTQSIDLA SLTRPANQSM TTCHGSDDGT KDSPMM

Type	Start	End	Confidence
Cytoplasmic	1	127	0.84
Transmembrane Helix	128	148	0.90
Non-Cytoplasmic	149	406	0.90