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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94732640, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGTARDVW TLFWGPALFL STICLWCARG EVCGPHIDIR NDITEFKKLE NCTVVEGYLQ  60
   61 ILLIGDKNNN LNQEHFRTLS FPKLTMVTDY ILLFRVSGLD SLSVLFPNLN VIRGRNLFYN 120
  121 YALVIFEMTS LKDIGLYNLR NITRGAIRIE KNPELCYLDS VDWSLLMDAE FNNYIAGNKQ 180
  181 SKECGDVCPG INEDRPHCIR TSFNDNYSYR CWTSNHCQKV CPKECEKRAC TDAGQCCHPQ 240
  241 CLGSCTEADN DKACAACQHY FHEDRCVEAC PPDTYKFEGW RCITMEMCAR VHLPSEVDFV 300
  301 IHNGECMPDC PPGFTRNETQ SMFCSACDGL CDKVCESKTI DSVDAAQSLQ GCTVIKGNLQ 360
  361 INIRRGNNIA SELESFMGLI QTVTGYVRIK HTHTLGSLSF LKSLRYIVGE ELVDNTYAFH 420
  421 AVDNHNLQYL WDWTQHNLTI KTGKLYFRFN PKLCMSEIRK MWEKTSVREK MAEDDVRSNG 480
  481 ERASCESYIL KFRSNHTQST RIKLTWERYR PPDYRDLISF IVYYKEAPFQ NITEFDGQDG 540
  541 CGSNSWNMVD VDLPQEKSID PGVLLSPLKP WTQYAIFVKA VTLVVEDKHV GGAKSEVVYI 600
  601 RTNASAPSMP LDARAYANSS SSLMVKWSPP IAPNGNKTFY FLRWQQQAED GELYQHNYCS 660
  661 KELKIPIRIS ATSLSDMEGE TKPTKSDVAG GEKGCCPCPK TKEDLKAEAE DRSYRKVFEN 720
  721 FLHNSIFTPR PPDRKRRDLM GVANSTLVSG VSRNISVLES NITQPELPEK EYPFSEGKVH 780
  781 TEFMEIHNLR PFTVYRIDIH ACNYEVHRCS AAAFVFSRTK PADKADDIPG SVTQERDEKG 840
  841 EGIVLLRWPE PLHPNGLILM YEIKYRLGTE AEKHECVSRQ QYKVLRGAQL SNLASGNYSA 900
  901 RVRATSLAGN GSWTEPVSFY VPPPKRNYDN AFYVAIIIPV IVLLLLLFVI VAVIIVTKKR 960
  961 NSDRIGNGVL YASVNPEYFS PFEMYVPDEW EVAREKITMC RELGQGSFGM VYEGIAKGVV1020
 1021 KDEPETRVAI KTVNESASVR ERIEFLNEAS VMKEFNCHHV VRLLGVVSQG QPTLVIMELM1080
 1081 TRGDLKSHLR SLRSKEQGSS SQSLPPLKKM IQMAGEIADG MAYLNANKFV HRDLAARNCM1140
 1141 VAEDFTVKIG DFGMTRDIYE TDYYRKGGKG LLPVRWMSPE SLKDGVFTTN SDVWSFGVVL1200
 1201 WEIATLAEQP YQGMSNEQVL RFVMEGGLLD KPDNCPDMLF ELMRMCWQYN PKMRPSFLEI1260
 1261 INSIKEELEP PFREVSFFYS EENKPPDTEE LDMEVENMEN VPLDPASTLA PSSQGNTGIQ1320
 1321 SQSPQPLSPA QGPGTPLGSA QTPSTSPPSS SASPGLALDK HSGQVAANGP VVLLGPAFDE1380
 1381 TQPYAHMNGG RKNERALPLP QSSAC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle