YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732834
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.56
Transmembrane Helix	41	62	0.81
Non-Cytoplasmic	63	128	0.70
Transmembrane Helix	129	152	0.87
Cytoplasmic	153	272	0.92
Transmembrane Helix	273	293	0.87
Non-Cytoplasmic	294	304	0.83
Transmembrane Helix	305	328	0.92
Cytoplasmic	329	537	0.98
Transmembrane Helix	538	556	0.74
Non-Cytoplasmic	557	570	0.59
Transmembrane Helix	571	591	0.64
Cytoplasmic	592	600	0.60
Transmembrane Helix	601	620	0.68
Non-Cytoplasmic	621	658	0.52
Transmembrane Helix	659	682	0.87
Cytoplasmic	683	700	0.52
Transmembrane Helix	701	716	0.45
Non-Cytoplasmic	717	733	0.64
Transmembrane Helix	734	756	0.83
Cytoplasmic	757	1053	0.73
Transmembrane Helix	1054	1072	0.51
Non-Cytoplasmic	1073	1083	0.46
Transmembrane Helix	1084	1104	0.49
Cytoplasmic	1105	1105	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFERISIMVI LLNCVTLGMY QPCENIDCTS ERCQVLQAFD AFIYIFFALE MVVKMVALGI  60
   61 FGRRCYLGDT WNRLDFFIVM AGMVEYSLDL QNINFSAIRT VRVLRPLKAI NRVPSMRILV 120
  121 NLLLDTLPML GNVLLLCFFV FFIFGIIGVQ LWAGLLRNRC YPEENFTLTS GLTLPTPYYQ 180
  181 PEEDDERPFI CSLAQDNGIM SCSDVPARRE GGRECCLDKE DALHRQALGL SAEPLVNGSA 240
  241 SAMGLCVNWN QYYTRCHTGH TNPHKGAINF DNIGYAWIVI FQVITLEGWV EIMYYVMDAH 300
  301 SFYNFIYFIF LIIIGSFFMI NLCLVVIATQ FSETKQREHQ LMQEQRARYL SSSTLASLAE 360
  361 PGDCYEELFQ LVCHILRKAR RRSAALYYML RGKAPPPGGG RGRGKGGAGS IGGGANVNGG 420
  421 EKHHCHSAQT SHCIHETKLD HSSENAVSLS ISPNPEECPQ CAAALSLKEG EESTGHSANG 480
  481 EEEEGALEET DRDENRLDKK RSSDSDDTLK KKRTCLGKCK DVWDEIRVKL WGIVESKYFN 540
  541 RGIMIAILIN TISMGIEHHN QPDELTNVLE ICNIVFTSMF TLEMILKLTA FGFFEYLRNP 600
  601 YNIFDGIIVI ISVCEIIGQS DGGLSVLRTF RLLRVIKLVR FMPALRRQLV VLMKTMDNVA 660
  661 TFCMLLMLFI FIFSILGMHI FGCKFSLKTE AGDTVPDRKN FDSLLWAIVT VFQILTQEDW 720
  721 NMVLYNGMAS TSPLAALYFV ALMTFGNYVL FNLLVAILVE GFQAEGDANR SYSDDDRSSC 780
  781 NLEETEKKDS LQLSDPKIST LTPNGHLDLA PAPNARGFYP SERLSFALGS RKSSVSSLGR 840
  841 ASLEQTTLCP GRASLYHNWG RPARPGIWSR RSSWNSLGRS SRCLGMGGGG SLRVRSPHCH 900
  901 PAEQESLLSP PPPPLHPPLL PRHFPPRRER RALSLELPEL LQVPGPPLPP LHPRQRKKSF 960
  961 SGGLGSVGEH QDCNGKTPSV QPQIINEVYP QVNTRKDRED LEDELDYSLC FRIQKMMEVY1020
 1021 RPDWCETRED WSVFLFSPQN KFRLLCQSII AHKLFDYVVL AFIFSNCITV ALERPKILQG1080
 1081 SLERLFLTVS NYIFTAIFVG EMTLK