YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91201825
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	35	0.96
Non-Cytoplasmic	36	54	0.94
Transmembrane Helix	55	75	0.94
Cytoplasmic	76	92	0.86
Transmembrane Helix	93	115	0.91
Non-Cytoplasmic	116	148	0.93
Transmembrane Helix	149	168	0.91
Cytoplasmic	169	194	0.89
Transmembrane Helix	195	215	0.92
Non-Cytoplasmic	216	232	0.81
Transmembrane Helix	233	255	0.85
Cytoplasmic	256	264	0.80
Transmembrane Helix	265	287	0.91
Non-Cytoplasmic	288	323	0.92
Transmembrane Helix	324	343	0.92
Cytoplasmic	344	351	0.88
Transmembrane Helix	352	371	0.95
Non-Cytoplasmic	372	406	0.89
Transmembrane Helix	407	432	0.82
Cytoplasmic	433	450	0.81
Transmembrane Helix	451	471	0.94
Non-Cytoplasmic	472	477	0.75
Transmembrane Helix	478	499	0.93
Cytoplasmic	500	662	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGGAHFRHL MKHHTPVFYV SVVLTALLVF WGYFAHEHLA DTAQSTLTFT INNFGWFYLL  60
   61 STAGFVGFCL YLIFSPYAYI KLGKQDDPPE YSFSSWLAML FSAGMGIGLV FFGVAEPMNH 120
  121 FAHPPHGLAE PHSPEAARMA LRYSFFHWCL HPWAIYAVIG LSMAYAQFRR GESGLISTVF 180
  181 RPLIGRKVDG PIGQLIDILA VLATVCGVAT SLGLGTLQIN GGLHHIFGVP NTVPIQMLII 240
  241 VIVTVLYLIS ASTGLNKGIL YLSNINLLIA GLLLAFVLVC GPTVFILDSF TTVIGSYLHE 300
  301 FVKMSFRLTP FRQGDEWVGS WTLFYWSWWI AWAPFVGTFI ARISKGRTVR EFVIGVLFVP 360
  361 SVIGALWFAA FGGSALYFDL FQDGSIADAV QSDMTSALFI TLEQFPLGIV LGTLAALLIV 420
  421 TFFVTSADSA TFVLGMLTTN GSANPPTSTK VIWGILLSSI AAVLLFSGGL AGLQTASIVT 480
  481 ALPFAVIMVF MCLALFTALR KDCQVTHPRT PESEPKNILC PVDYSIYSEK ALNYAIEIAG 540
  541 KYGSKLYLIH VLDARVHGVN EPVLYRFNIG DESAIKELKE RLLRCVQEDI RSKMPVESII 600
  601 VQGVPFVEIV KAAREYAIDL IVMGTHGRTG ISHAIMGSVA ETVVRKAHCP VFTVRQAEYD 660
  661 SG