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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90399381, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSVLLLLL AAVAQAQKAP TATTDRIEAE ALKAVFEKLD QKAEWNTTGD PCSGAATDST  60
   61 DINDSSINPA IKCDCSDQNN TVCHITGLNL SHNFLVGTIP SFIGELAAMQ YIKSHILSLE 120
  121 HTRTFGINAL SGSIPKELGN LTNLVSLGFS SNNFSGSLPS ELGSLFKLEE LYIDSAGLSG 180
  181 ELPSSLSKLT RMKILWASDN NFTGQIPDYI GSWNLTDLRF QGNSFQGPLP ANLSNLVQLT 240
  241 NLILRNCMIS DSLALIDFSK FASLTLLDFS YNQLSGNFPF WVSEEDLQFA LPSGLECLQQ 300
  301 NTPCFLGSPH SASFAVDCGS TRFISGSRNS SYQADATNLG AASYHVTEPL TWEFGFEDTE 360
  361 SWKSRGRRVF DIYVQGERKE KDFDIKKEAG GKSYTAVKKD YIVSVTKNFV EIHLFWAGKG 420
  421 TCCIPTQGYY GPTISALSLS PSLVALVGIF LWRKKRRKLS LEQQELYSIV GRPNIFSYGE 480
  481 LRSATENFSS SNRLGEGGYG AVYKGKLMDG RIVAVKQLSQ TSHQGKKQFA TEIETISRVQ 540
  541 HRNLVKLYGC CLEGNNPLLV YEYMENGSLD KALFGTEKLH IGWPARFEIC LGIARGLAYL 600
  601 HEESSIRVVH RDIKASNVLL DANLNPKISD FGLAKLYDDK MTHVSTKVAG TFGYLAPEYA 660
  661 MRGHMTEKVD VFAFGVVLLE TLAGRPNYDD ELEEDKIYIF EWVWRLYESE RALDIVDPNL 720
  721 TEFNSEEVLR AIHVALLCTQ GSPHRRPSMS RVVAMLTGDA EVGEVAAKPS YITEWQIKGG 780
  781 GTTTTTTTGS SSTSSSAANR QWSSAPPPPR ATSSPKMSSP FLSSVVDEGR NLIEQLLGGA 840
  841 LSAVAQAQQA PTTRTDPTEA AALNAVFAKL GQKAQPSWNI TGDPCTGRAT DGSSTEDDSF 900
  901 NPAITCDCTD QNGTVCHITK LKIYAMDASG PIPEELRNLT RLTNLNFGIN ALSGSIPKEF 960
  961 GNLTNLISLG LGSNNFSGPL PSELGNLDKL TELYIDSAGL SGELPSSFSK LTKVEKLWAS1020
 1021 DNNFTGKIPD YIGSWNLTDL RIGDIENGSS SLAFISNMTS LSILVLRNCK ISDNLASIDF1080
 1081 SKFASLKLLD LSFNNITGQV PEAMLGLNSL NFLDFSYNQL SGNFPSWANE KNLQLNLVAN1140
 1141 NFVLDNSNNS VLPSGLECLQ RNTPCFLGSP HSASFAVNCG SNRSISGSDN YVYQADGVSL1200
 1201 GAAQYYVTGE TKWGVSSVGK FMDAPSNGIY IFNSSRQFQS TLDPELFQTA RLSPSSLRYY1260
 1261 GIGLENGNYT VTLQFAEIEF EDTKSWKSLG RRVFDIYIQG ERKERNFDIR KATGGKSYTA1320
 1321 VKKQYLIPVT KNFVEIHLFW AGKGTCCIPA QGYYGPSISA LSLKPNFIPT VRSAAAQRKS1380
 1381 SSKTGVIVGV VVGVAVFGLV ALAAIFLWMQ KRRKLSLEQQ ELYCIVGRPN VFSYGQLRSA1440
 1441 TENFNFSNRL GEGGYGAVYK GKLTDGRVVA VKQLSQTSNQ GKQQFATEIE TISRVQHRNL1500
 1501 VKLYGCCLEG KHPLLVYEYL ENGSLDKALF GTEKLNIDWP ARFEICLGIA RGLAYLHEES1560
 1561 SIRVIHRDIK ASNVLLDANL NPKISDFGLA KLYDDKKTHV STKVAGTFGY LAPEYAMRGR1620
 1621 MTEKVDVFAF GVVLLEILAG RPNYDDALEE DKIYIFEWAW DLYENNNPLG LVDPKLEEFN1680
 1681 REEVLRAIRV ALLCTQGSPH QRPPMSRVVT MLAGDVEAPE VVTKPSYITE WQLKGGDTSY1740
 1741 LDSEVSWQSS SAPGGPASPR TSSPFLSSVD 

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