YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40177
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	76	0.55
Transmembrane Helix	77	96	0.61
Cytoplasmic	97	155	0.91
Transmembrane Helix	156	179	0.85
Non-Cytoplasmic	180	217	0.90
Transmembrane Helix	218	240	0.90
Cytoplasmic	241	248	0.92
Transmembrane Helix	249	272	0.89
Non-Cytoplasmic	273	280	0.76
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	315	0.82
Transmembrane Helix	316	334	0.92
Non-Cytoplasmic	335	400	0.75
Transmembrane Helix	401	424	0.87
Cytoplasmic	425	433	0.70
Transmembrane Helix	434	458	0.84
Non-Cytoplasmic	459	470	0.66
Transmembrane Helix	471	492	0.93
Cytoplasmic	493	499	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAPRSSPV SPEEQSTQES SPNDSYVPRS TLRSSDEEPK SILELYTPKI LTSMETVADE  60
   61 EAENVPETMC EIFSQSLVPF FLGGCGSISA GLLLTYANKT MTLVKEVPEF LVLMPPLQGL 120
  121 RGNLDMTFSS RMSTLAHKGE FNEPDIYLRV RKNAAVAQAL SILICILTNL ISYCIVQITP 180
  181 SLDNPTLANS TSLQSIHNDT YHYLDNKETA LFLTGSSILS VALNCAICTT FLFTIVYCAW 240
  241 KNDYNPDNIV APLGASISDM LTIGSMLFFC YLLRPYSGFS SSVPVVIVVV AACSIPLWIM 300
  301 IAWNDEDALR IAKQQCFTLA FAAMVSCGAG LLQSKGAMTY PNYPAYQTLI SGLAGNRGAV 360
  361 LASRISSHLE VHKTSDLGWR QRASPISYYR SASSESRTAR LLLFTALPFQ MFFVGLSTAM 420
  421 SFVIDEPVET DFRFFIAYAL VVLIQQSTIL YLAQLIVFAF WSFGIDPDNH AIPLLTSAAD 480
  481 VCGCGLLYLL FLSLDKGFR