YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169616888, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIMRPSLL RHAVQLPAAS QRSLSIVTSS SLNRPLAQQL RPAFQRSAMP TSTRIAAFHA  60
   61 TQRNQILPPL PQKIEGTTND PTPVPNPDYS HGSYHWSFER IISAGLVPLT LAPFAAGSLN 120
  121 PVTDSILCAL LVVHSHIGFE SCIIDYFPKK RIPKLRAAAH WALRISTLLL GVALYSFETN 180
  181 DVGITEAVSR VWHA

Type	Start	End	Confidence
Cytoplasmic	1	100	0.80
Transmembrane Helix	101	117	0.65
Non-Cytoplasmic	118	125	0.60
Transmembrane Helix	126	147	0.61
Cytoplasmic	148	159	0.74
Transmembrane Helix	160	177	0.75
Non-Cytoplasmic	178	194	0.86