YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169621173, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSTETTP LISSLSNATR PPVSPKPPKP QRTVTFNPTV QSSTVVPPSR SFSNGSQASG  60
   61 AAAGQPMLSS LNSKLRRRNS SGAPVKGLPA PKIGPQRTTR TAQKLKLLPD PENDDVEDEE 120
  121 SGRDVYVQYT RIKDPTARRD AARLGKADRE RLPRVTAYCT SASYKLDDLM RFLKGKQKLR 180
  181 GALPKRFDEC IYSPYSYGTK GSVDVASTSV LGGGSEERPR RFSDSAIEVE TENQRRRDNL 240
  241 IDLHDEGDAP DIDMDEEPQR PRRPSMTHAD SDPAMEVPDF DIQVHTPEVF LFEYGTVVIW 300
  301 GMTLQEEKRF LKEIAKFEVD KLGKDEVETE EFNFYYTREY QARIYNDFIS LREKKNYMIK 360
  361 LAISHGLSQS VKTSLFEDLV DNTIEVTKDI PEQIASSGKI NLNKKQINMQ IGELFILRIS 420
  421 IHLQGSVLDA PELMWAEPQL DPVYQAVRSY LEMDQRVSLL TERLNVIGDL LAVLKDQLTV 480
  481 THGELLEWIV IILIFAEVLV AAINIFVDLH AAD

Type	Start	End	Confidence
Non-Cytoplasmic	1	487	0.88
Transmembrane Helix	488	507	0.78
Cytoplasmic	508	513	0.54