YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110827356, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	272	0.55
Transmembrane Helix	273	290	0.50
Cytoplasmic	291	303	0.89
Transmembrane Helix	304	325	0.80
Non-Cytoplasmic	326	338	0.70
Transmembrane Helix	339	359	0.94
Cytoplasmic	360	368	0.78
Transmembrane Helix	369	387	0.94
Non-Cytoplasmic	388	397	0.72
Transmembrane Helix	398	416	0.92
Cytoplasmic	417	427	0.79
Transmembrane Helix	428	450	0.89
Non-Cytoplasmic	451	455	0.83
Transmembrane Helix	456	476	0.91
Cytoplasmic	477	509	0.94
Transmembrane Helix	510	532	0.85
Non-Cytoplasmic	533	549	0.87
Transmembrane Helix	550	571	0.90
Cytoplasmic	572	579	0.90
Transmembrane Helix	580	599	0.95
Non-Cytoplasmic	600	606	0.78
Transmembrane Helix	607	627	0.94
Cytoplasmic	628	641	0.85
Transmembrane Helix	642	661	0.83
Non-Cytoplasmic	662	668	0.65
Transmembrane Helix	669	689	0.93
Cytoplasmic	690	701	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGYGQCHAG ARRNVRRHPG GAAGHPRRPL APPHERPRAG IRAGQPGDPA RGPGLGLHAL  60
   61 LPEQPEAVPA AGGRPGRRPG AAHAGARHRH PHRRARLPRL PRWRAGGRGG RPEGAVARRF 120
  121 RGLRAGLLVL VRARPHRGGH SAAPCGRRQE RGHVQDEHPD RAGRPLPRAD GGVDAPDEGG 180
  181 RRHSRGADHR ARTPGARRAG AHRRPRAHRH CRHHSARLRR CGAYRARRTA RVLGLRRDAA 240
  241 GGGDGRETRA VHHALAGLHA DHRHAQPRPP VRLSAPGFST LFFITRRIST MWLQETKPQE 300
  301 RRTLVAAFAG YGVDAFDYMI YTFMIPTLIL VWGMTKTEAG YIATGALVTS AIGGWLAGIL 360
  361 ADRYGRVRIL QLTVLWFSFF TFLSGFTQSP EQLFVTRALQ GLGFGGEWSV GSVLIAEMIQ 420
  421 ARHRGKAVGL VQSSWAVGWG VSAIAFWAVY ALLEPALAWR VLFWIGVLPA LLILYIRRNI 480
  481 SDPEVYHQTR ARMAQEGDKG NFLEIFSPQL LKTTILAGLL ATGMQGGYYA VTTWLPTYLK 540
  541 MERNLSVFNT SGYLLVLILG SFVGYLTSAW LSDKLGRRRC FMLFALCAGL LVIAYTQIPI 600
  601 TDGMMLVLGF PLGFFLSGIF SGMGAYLSEL FPSRVRGSGQ GFCYNFGRAV GSICPALIGY 660
  661 MSTSMPLGIA IGYMAAGGYL LVIVASLLLP ETGGLELSSE D