YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90306721, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.94
Transmembrane Helix	33	55	0.90
Cytoplasmic	56	63	0.80
Transmembrane Helix	64	84	0.93
Non-Cytoplasmic	85	99	0.91
Transmembrane Helix	100	121	0.91
Cytoplasmic	122	251	0.98
Transmembrane Helix	252	272	0.92
Non-Cytoplasmic	273	288	0.91
Transmembrane Helix	289	311	0.89
Cytoplasmic	312	331	0.87
Transmembrane Helix	332	353	0.84
Non-Cytoplasmic	354	362	0.79
Transmembrane Helix	363	382	0.89
Cytoplasmic	383	420	0.94
Transmembrane Helix	421	442	0.88
Non-Cytoplasmic	443	452	0.78
Transmembrane Helix	453	472	0.93
Cytoplasmic	473	487	0.81
Transmembrane Helix	488	505	0.95
Non-Cytoplasmic	506	518	0.75
Transmembrane Helix	519	540	0.91
Cytoplasmic	541	563	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGASPSMS TSAKVAEPSG PISYFAHGEH FGVILGHIVL MVLAWFFILP IGVMFSVARS  60
   61 HLALPVQFLF LVVNAVGLLL GIIYNTQTPD LYVNNSHHKI GWIATWVMIA EVVMGLLFAY 120
  121 SGRNRYVAGS AYERLAFLPV SQDTPQDSRA SYSRGDYQYR WSGDSGQGTE RCSSSLRSPR 180
  181 SSSMERGRSL SRGNDVDDFE EKPINEAGDI TRPRKFLGSR FLDKYLAHRI PGLLSQRALN 240
  241 ILKAIYVIIE RTILPLGFIA LVSGGVTYGG IFRGNNIFNG LAHFIKGGIF LWYGLLTLGR 300
  301 WLGCFADFGW AWNIKPSRAI VGWKSRVPTG EFTESLVIFL YGSSNVFLEH LAAWGGAWTA 360
  361 QDLEHVSISI MFFGGGLCGM LSESQRVRDW INMSVLPAPT NVEQPAKDEV WQAPKTQRLS 420
  421 LNPMPAIVIL LLGLMMSSHH QASMVSTMVH SQWGMLLVGF SMARAVTYII LYLNPPSSLL 480
  481 PSRPPSELVA SFCLISGGLI FMLSTKDIIE VMIHYDLNAM FVFTVAMGFT AFVMAWEIVT 540
  541 ISLKAWASKK TAPPSPQDLH FPE