YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90301547, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.91
Transmembrane Helix	81	103	0.91
Non-Cytoplasmic	104	109	0.76
Transmembrane Helix	110	134	0.84
Cytoplasmic	135	160	0.60
Transmembrane Helix	161	180	0.54
Non-Cytoplasmic	181	191	0.66
Transmembrane Helix	192	210	0.97
Cytoplasmic	211	219	0.65
Transmembrane Helix	220	243	0.87
Non-Cytoplasmic	244	272	0.80
Transmembrane Helix	273	296	0.73
Cytoplasmic	297	311	0.94
Transmembrane Helix	312	334	0.89
Non-Cytoplasmic	335	359	0.92
Transmembrane Helix	360	381	0.72
Cytoplasmic	382	412	0.81
Transmembrane Helix	413	433	0.93
Non-Cytoplasmic	434	442	0.82
Transmembrane Helix	443	467	0.87
Cytoplasmic	468	481	0.93
Transmembrane Helix	482	504	0.89
Non-Cytoplasmic	505	524	0.92
Transmembrane Helix	525	545	0.91
Cytoplasmic	546	703	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTENMFQPT MTETVENLPK ARKKGFPRLG IMESWEKKGA GDDSDGPVTT KQEYVGQGGP  60
   61 QVLEAEEEGF SLHRGLKARH ITMIAIGGAL GTGLIIGTGS ALAKAGPASV LISYLIVGFV 120
  121 VWIVMCALGE MAAWLPLPSG FTGYAVRFCD PSLGFALGYC YYCKYIIITP NQLTVAALVI 180
  181 QYWIERERVN PGVWIAIFLV VIICINYFGI RFFGEFEFWL SSFKVIVIVG IILLSLILAL 240
  241 GGGPDHDRKG FRYWKNPGAF RELYQTGNSG RFLGFWSTMV TATFAYLGTE LVGVTVGEAQ 300
  301 NPRKTIPRAI KLTFYRILFF YILSVFLLGM LVPYDSKELA FASQQSSSAN ASPYVVAIKL 360
  361 AGIPILPDIL NGCILVFVFS ASNSDLYIAT RTIYGLAREG KAPRILARTD RRGVPIYALA 420
  421 LSSLFALLAF MNVSDDSKTI FGYFVNLVTI FGLLTWISIL VTHIYFVRAR KAQGVEETSL 480
  481 AFKAPLGAAG SYSACAFCIL VSITKSYDVF IHNPETYGNF DYKNFITAYL GIPLYLIMIF 540
  541 GYKFVTKCQG VKPEEADLWS GKDAIDREEQ EFLARKAAEQ GQRSQANWFY RTPTTPALAP 600
  601 DEYLRANPRV TPQIRIQPCE WPSMSLNLRS RVGRGLTLGG TVRVRCALKR RGVARCNDST 660
  661 RRRDLKRGEM RLDSLVCDDT SHEMRSKAVF TFNVVSRCEV RHW