YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BST1_COCIM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	120	0.99
Transmembrane Helix	121	143	0.96
Non-Cytoplasmic	144	793	0.97
Transmembrane Helix	794	811	0.74
Cytoplasmic	812	831	0.60
Transmembrane Helix	832	853	0.79
Non-Cytoplasmic	854	892	0.79
Transmembrane Helix	893	923	0.83
Cytoplasmic	924	949	0.73
Transmembrane Helix	950	969	0.70
Non-Cytoplasmic	970	972	0.62
Transmembrane Helix	973	992	0.86
Cytoplasmic	993	1006	0.87
Transmembrane Helix	1007	1030	0.89
Non-Cytoplasmic	1031	1046	0.82
Transmembrane Helix	1047	1066	0.90
Cytoplasmic	1067	1075	0.75
Transmembrane Helix	1076	1098	0.86
Non-Cytoplasmic	1099	1104	0.56
Transmembrane Helix	1105	1122	0.92
Cytoplasmic	1123	1150	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGRPNGASG DPNPRNDTSV TIDSDSDNGS RHRIAEVRGS SPSQIVPEKA TILNDKVKAG  60
   61 PCLSTEKDLG IRKQLALSHT ESIIASNPIA VMPLESPKQR LAMESSTESH RLRRARTRNP 120
  121 WICSGLVLFV TVSALLILSI IVYSYQSLQV DPQGCRTPSM RPTYIKLVGF DSEHTRFASK 180
  181 YGLYLYRERG VDEYSEEDIG IKGVPVLFLP GNAGSYKQGR SLASEASLYF HDVLQYHQER 240
  241 LKTGVRGLDF FMADFNEDMA AFHGQTLLDQ AEYVNDALAY ILSLYHDPRR PGRDLNLPDP 300
  301 TSVILIGHSM GGIVARTVLT MSNYQTNSVN TIITMSTPHA RPPVSFDSDL VHTYKQVNNY 360
  361 WREAYSQKWA NNNPLWHVTL ISIAGGGGDT IVPSDYTSLS SLVPETHGFT VFTTTIPNVW 420
  421 TGMDHLSIAW CDSFRKVIIR SLFDVIDVRR SSQTKQRADR MSVFKKWYLT GMEVSAERKL 480
  481 PRKEHTTLLT LGDDTKSKSI LRQDEKLTLR GFGHRKGPKS HLMPIPPRGG VPEKKLTLLT 540
  541 DQKLNSMETN RKLDVLFCSD FPLRAGQSAT LPSLNLDLSG GSASSIRLVC KSAAEDVISL 600
  601 PTSTSSSKFA FDNVPSLSYL QYDLEDLTEY QFVVVIDKAE TRYPGWLHAE FSDSSDSVIP 660
  661 TRVGLGRLLS AGLNIRLPAE RPMVIDIKVP ALHSSLLAYK LHVESKDCDG TELFKPMVRQ 720
  721 YISGPYESKF FVNVRDAEIN LHGIAPYMPP HIGDNAAATG ISFQLWSDAS CNGPLQLSLK 780
  781 VDVLGSMGKL AMRYRTVFAA FPLLVVSLVL RQQFKVYNQT GIFISFMQAL DLCIRSSIPL 840
  841 LFLGLTFLAS SLATSKNTLS KSASPNAGSN STESVIDFSA NDLLLGSQDA FFWFLVPLFG 900
  901 IISIGTCVIV NYVAMILIHA LGAIRAILMS RKGYIKHDER GNTSIFWSLS TKNRVINTAV 960
  961 LLLFVATFIP YQFAYVVACV VQLVTCVQAS WHARETRSAS HSSFYNYVHS IFILMIWILP1020
 1021 INVLVLIVWI HDLAVHWLTP FSSNHNVFSI LPFMLLVETL TCGTMIPRIT THLRHITYVL1080
 1081 FFFLAAYSAI YGVTYAYLLH HITNLVIAWL VGIHFFAGGF SLRNLSRVIN DSDGVPNGSP1140
 1141 ITDGHIKKLP