YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119189209, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	820	0.89
Transmembrane Helix	821	839	0.86
Cytoplasmic	840	849	0.75
Transmembrane Helix	850	869	0.94
Non-Cytoplasmic	870	879	0.66
Transmembrane Helix	880	901	0.91
Cytoplasmic	902	909	0.93
Transmembrane Helix	910	932	0.93
Non-Cytoplasmic	933	944	0.84
Transmembrane Helix	945	965	0.96
Cytoplasmic	966	1014	0.96
Transmembrane Helix	1015	1034	0.95
Non-Cytoplasmic	1035	1049	0.81
Transmembrane Helix	1050	1071	0.90
Cytoplasmic	1072	1078	0.90
Transmembrane Helix	1079	1099	0.95
Non-Cytoplasmic	1100	1106	0.86
Transmembrane Helix	1107	1129	0.93
Cytoplasmic	1130	1142	0.85
Transmembrane Helix	1143	1165	0.89
Non-Cytoplasmic	1166	1171	0.93
Transmembrane Helix	1172	1194	0.92
Cytoplasmic	1195	1235	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSQEPSQP KVLARACQFC RARKIKCDTQ RPSCSSCINQ KKECVYILEV PKRRPSTAIV  60
   61 NALQGEKRAL EDVVLRLKRA SPDEVAGILE SIPIVDGNVV VKTISPALAV LQEPKSATRT 120
  121 GKRHQSDDDG AGISSDEDLD VLPFLSVGEG GKVDTFGPSS ALQGPTRPVI PTESPVAEHV 180
  181 RNQLIANAIL QRQREHDLCY RQDVFGVPLE LAKHLLDLHW NRQHHTFLLT YRPAIMRDLM 240
  241 QNGPYCSEFL INAIFACSSK YSQRIEVRDN PVDSTTSGLR FFARCDQLLA EQSLLNASSI 300
  301 ATLVGLLLLG STYNARGDTS KGWLYTGYAL RMVYDLGLHL DYKATTANAE DIEIRRRVFW 360
  361 GAFICDKLQS LYLGRPMTIH LRDVHVSRNF MDTMEEKELW TPYVDPMFPT ENMSTIPLTP 420
  421 TPIHSVSTFQ QLCLLSRIMT KIINRFYVVG ATAANARASL QSIDDALISW KDSLPGDLKF 480
  481 EPWSGNPATS QARPAPNVMI LNALYYSLVI LLHRPFISDG HLRSAVPPAS SWKRCSTAAR 540
  541 NITSIVLAYQ ATYTLRGAPY LMSYAVYVAC TIHVRNAAAT ERDNPGENSS LLSASLHSLD 600
  601 ELSLPNVGVS KPARIIRKIM AANGLQLVSD PPGVDIHSPS SLDLDAILRM FPSRSPVTGD 660
  661 LNHGDTFSSG FSMPNSHYAQ EDLLYGFMDG QTHSFPDFTT NGVFRMVASA PPVFPHGVAI 720
  721 LLQPATAPWI TEKMDKSSEV GIGGEVTEKR DEFVLPELQE YHDLQAKFDE NRVKSLLRRV 780
  781 DVRLMPPLAI LYLVAFIDRS NIGNARLQGL EKDLNLSPQQ YAWCLTIFFF PYALFEVPSN 840
  841 IMLKLLRPSI WLTIIVFGWG IIMTVMGLCQ NYSALLACRF FLGVFEAGLF PGCTFITTAW 900
  901 YKRFEVQYRV ALFYSAASLS GAFSGLLAFA IGNMTGVRGY SGWRWLFILE GIATCVVASI 960
  961 CYFFIPDSPG SAKWLSPEEA RFLELRLQFD GHDKGYKEGG FEWKYLIQGF TDAKVYIGTI1020
 1021 IFGAICICTY ALSYSLPTMI NLLGYSAANA QLLTIPVYAF GCIICVLNSV LSDRYKHRAA1080
 1081 FIIAPMGMTM IGLIIGMAVD PTKLPGVIYF ALFLVAGGIF SGIPTTVAWT SNNLAGQWKR1140
 1141 AVGMALQFTL GNLVGGTVGS NIFLVKEKPK YMTAYSVLFS VTACAFLSGW ALLFCIRRWN1200
 1201 AQKAALVEQA EREGRDLDAE CKDLGDKNPY FKYTL