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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90591507, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQMKLKYT LVFTIISFFI STAGFAQQYT DEEIGLNVSK ITASLKEKGV AEADIEFEIS  60
   61 LLRKMHTNQY AKIKQNENEI LKETKAKALT NKSALTADIS STEKAALQAL YNSTNGANWI 120
  121 NKQGWDFSTP VTSWDGTNGW YGITVTNGTI TSINLGQNNL TGTLASEIGS LTNLQQLYLQ 180
  181 DNELSGAIPN EIGNLLSLKI LYLNDNKLAG SIPTQMGNLV NLSQFALSFN KLSGSIPSSL 240
  241 GNLNNVEFFF IGNNELTGSI PPEIGNLSKV THLYLYHNQL SGSIPTQIGN LSKVQALFLE 300
  301 YNNLSGSIPN EISNLSSLKF FNLSNNQLTG PIPTGIGNLY YNLLEVYFRN NQLSGPLTND 360
  361 ILLYNLVSLY LDNNQLSGPI PSSINRLRNI GLLYLDHNQF TGTIPANIGN LPEAIHLNLS 420
  421 NNQLTGTIPP ELGGLSKVQM LDLSFNQLTG SIPLEIGNLT SIRNLFLNNN EFSGTIPSRL 480
  481 TQLTLIGNFY INNNKFRFID FANEYQTYKN FYGFKYVDQA KTDTKETKNF DIGSSTTLTM 540
  541 CTDNRYTIND TFQWYKGKFP DGGLINGATN REYTISNLGA SDAGDYYCLS SHPQITIATN 600
  601 PDRNLVLERE PITLKIACAT EVTGASIMPS NNSFTTDTNI EFYLDSTYPN LTYNWTFYNL 660
  661 DNTPNETYEG NYILKSFDTP GTYRMNLIVM QENGCTTSFD KYITVKYANP CLSSETGSII 720
  721 VKGFDYDYNN LPNNVFSNTS TYFSFDTMSR NLSYNWKFYN PDGTFLTSKP YQSFDIIFEN 780
  781 NGEHKVVLEI TDLYGCTATF EKIIPVIKDC RKTGVILTYE GSSLDEILEN TSLSVKLFGN 840
  841 DFDLDGKQFD WEFLNPNGSI VSTGSNPVFT VTPPTVGNYR INLKITDPES DCVYDFSVVL 900
  901 EAVDACRMTH LTRNGYISLN GQSEYLNDVL FLDLNQTVEL GLFREWYNET GKTFNLEWNF 960
  961 YSPNSELIST GNQPRFPITL TTEGFYKVTL KVTDPETGCF TEVSRKFSSV KQNSCTLTNE1020
 1021 RSNQVKDLTR ALIKKLILRT VTGETDAQIN ASPFLEEFTS LKPFIINSPN DKIYNYKTTR1080
 1081 NKFGILINVD FSFSPERESD VHISVRDGLF TNFQRDYVYK NIDDAVYIDI NQYVTADETL1140
 1141 LSCWTYAKDR SLAKSALEQK DCRYSSEIKN INFCPNPCTP IVGTMKTSSN DFFTNRKTVF1200
 1201 SLETLSTDLT YKWTFYNSDN TSFTNFTTSN VDYLYRTAGN YNVVLEVTDS KGCSATFEKT1260
 1261 IVVSVNTNCV SLPGTILTST PEVYVSKNTT FSFETPATDL TYKWIFTQNK TNESTVFFSK1320
 1321 TVDFTYLLPG SSEIRLEVTD SNGCKSIFQK SVTIKQSTSL CDNVIQFGRS YIQVGTDSDL1380
 1381 FKSATISVNQ TTNITFSSQN YSPQYDLEYK WSLLNEDDQV VDSGNNLNFP ITPVKGGYYK1440
 1441 AVLDLKDHTS GCVYQLVRSI VCTIPSSCTG TNPQSTVVKG LVINLLKNLI SRSMMGESDA1500
 1501 DINSSAVPTE FNTLKPYITT NTAKNRIYNF ATTRSTANEF TSVSFSFSPE RASDIYISIP1560
 1561 HSLQYSQGMP LDYLLSMIES KIYIDLSQYA SSNQYLISCL SDSQASAKSV LHTGDCLRAS1620
 1621 EIRYIDFCPN ECDPLLGVIK TNSEIVSLNT PAVFSLETNN ASVLSYNWTF YNPDNSVREN1680
 1681 QTTSNAFQTY TIPGTYKVEL EAKDVNNCTT TLTKMITVAA PACVAAIGTI KTVSPNIFTG1740
 1741 TNTEFLFETT ATNLTYEWTL YRNVNSSITI FTTNTANIYY LDPGNYNVKL IVTDANGCKN1800
 1801 TFRTTVTATV KPPCVNVVGE IKTANPIIST NENTTFSFET TATILRYYWT FHSLNNTPLL1860
 1861 TTTESSPTLM YTFPNNYKVT LTVWDENDCY TIIEKNINVV RGCPVIPGSA NIPETVTSGQ1920
 1921 IIPFEYSTTS NGVGYKWTFY NLDGSIKSTS TSNKINKAYY ATGNYRVTLE LNDLFNSGCK1980
 1981 TTIDKIVTVT GECGIQGTIA SNPAAESISL DQYVYFWFES EAIDLNYKWT VTKPDNVSSQ2040
 2041 YSTDKYAPYY FQSGSGTYKI AVEVSDGNGC ILNLEKTYNL EYDCSRNTGL VTGSIYNNNH2100
 2101 KFYYSSDVLI NAPNKFTFWY DYSSQENLPV NWELTDLNGS LISSGTEKEF IFTPTTSAGL2160
 2161 ILKLTITDQY GCPHHFSKEL NVVEKCQFYV SDISGDINFD EEYSYKVAFI DANQTKDLIL2220
 2221 RSYDENDGKV YTYQWNLYDL DNTLVSTGDQ QKFPITLTKA GYYKVTLDII DPDTDCPVQF2280
 2281 TKKIGCVINN SCTETNPKSQ IVKELYLDFM RSLVMRCLLG ETDEQINTSP MTPEFTALVP2340
 2341 YITNGPKDKI YNFKTKLGGE SGNSFAGFEF SFSPDRQSDV YYYTRWSLYY NSWDLEKTID2400
 2401 DINYTLYLAL NQYVAADQSL VSCFIDYASK MAGKNVNHLE TDECLFQTAV QYIEFCPPED2460
 2461 CSPIAGTLKS TPVVGIQKTA KKAQLKQTPK K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle