YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90413686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.66
Transmembrane Helix	37	59	0.73
Non-Cytoplasmic	60	64	0.39
Transmembrane Helix	65	86	0.87
Cytoplasmic	87	88	0.41
Transmembrane Helix	89	109	0.55
Non-Cytoplasmic	110	116	0.62
Transmembrane Helix	117	135	0.95
Cytoplasmic	136	150	0.84
Transmembrane Helix	151	171	0.92
Non-Cytoplasmic	172	184	0.82
Transmembrane Helix	185	203	0.92
Cytoplasmic	204	210	0.76
Transmembrane Helix	211	231	0.93
Non-Cytoplasmic	232	251	0.83
Transmembrane Helix	252	271	0.86
Cytoplasmic	272	305	0.82
Transmembrane Helix	306	323	0.57
Non-Cytoplasmic	324	329	0.48
Transmembrane Helix	330	353	0.81
Cytoplasmic	354	358	0.45
Transmembrane Helix	359	382	0.79
Non-Cytoplasmic	383	393	0.62
Transmembrane Helix	394	420	0.82
Cytoplasmic	421	429	0.62
Transmembrane Helix	430	448	0.84
Non-Cytoplasmic	449	449	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTKAEELH SKEGISSSFL ERFFKLKEHG TNVKNELIGG ITTFATMAYI IFVNPSIMAA  60
   61 TGMDPGAVFV ATCIGAAFGT LLMGLFANWP VGLAPGMGLN AFFSFTVVGE MGYSWEVALG 120
  121 AVFISGILFV GMSFYKVREW IIESIPESLR YSMTAGVGLF LGLIGLKTAG IVVDNPATLV 180
  181 SLGDFTQPDA LLAAICFLII AVLSERKVFG AVLIGIIGVT LVGMMLGIVQ YQGIFAAPPS 240
  241 IAPTLFAMDI QGALNISMVS VVLAFLFVNM FDTAGTLMGV ADRAKLINKD TGKIEGLSKA 300
  301 LKADSIASVA GACVGCPPVT SYVESAAGVA AGGRTGLSAI VISLLFVAAI FLSPLASMIP 360
  361 AYATSGALIY VAFVMMSSMQ HINWKEFTDS APAAITALMM PLTFSIANGI ALGFITYTVL 420
  421 KLATGKTKEV SISMYVLTAI FIAKLVYIG