YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89046399, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQNKNLIL ATALSFIVIL IWFVLFPPPE QAPGLTNAEG EVVAQDDTAL RDEMSPDGAI  60
   61 DGTAAGTPVA TLEQDAPVEA ARVAIETPRL VGSINTAGGR IDDLKLTAYH ETLDPDSPLV 120
  121 RLLSPGGEEA QYYALHGWIA LSGASADEVP GDSTVWEIEE GETLTPDSPV VLRWENGAGL 180
  181 VFRKTIAVDD NYLFTVTQSV ENTTGDAVEL RPYGQVRRHG LPDSRQFFIL HEGVVRMADG 240
  241 ELEEIDYDDL PDLTAEESRI EVAEDGWVGF TDKYWMTTLV PASGTPFRSV AREVNGIYLT 300
  301 ESIYPPVAVA AGETVSAESH VFAGAKEWET IRAYEAAGID RFVDSIDWGW FFFLTKPIFA 360
  361 LLHWLNGVIG NMGWSIIVLT LIIKAVLFPL AYKSYASMAK MKELQPEMEK LKERAGDDRQ 420
  421 ALQKGMMELY KTNKVNPASG CLPILLQIPI FFSLYKVIFV TLELRHAPWI GWIRDLSAPD 480
  481 PSSILNLFGL LPWDTPDPGS IFFIFSLGVL PILLGISMWL QQKLNPAPPD PTQRMIFAWM 540
  541 PWVFMFMLGS FASGLVIYWI ANNMITFTQQ YLIMRSHGYK PDILGNIRGK GAAAAKK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.60
Transmembrane Helix	8	26	0.92
Non-Cytoplasmic	27	359	0.67
Transmembrane Helix	360	392	0.74
Cytoplasmic	393	439	0.90
Transmembrane Helix	440	459	0.81
Non-Cytoplasmic	460	498	0.85
Transmembrane Helix	499	520	0.93
Cytoplasmic	521	537	0.89
Transmembrane Helix	538	561	0.91
Non-Cytoplasmic	562	597	0.93