YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|99034481
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEFEEMLK EILQEINDQG FNKDNIIDKI KDKLQEKDPR VYNGWKDNKF DIDHLFLPGI  60
   61 MLRMIAKDTK LTGFFIEYER TLLYVAAEHG HIQIVENLLD NGAKTGIKNG YCKEAPLHVA 120
  121 AKHVHIRIVE ILSKKEADID LKNRYGETPL HYAAKYGHTQ VLENLLGRST NVNVQSEVGR 180
  181 TPLHDAANNG HIEVVKHLIK KGADVNVQSK VGRTPLHNAA NNGYIEVVKH LIKKEADVNV 240
  241 VDQYGRTPLH DAAKHGRIEV VKHLIEKEAD VNVQSKVGRT PLHNAAKHGH TQVVEVLLKK 300
  301 GADVNIQDRG GRTPLHYAVQ RGYPKLAKLL LNDGADPSFI HRSKAITAGV AVGILAAIVT 360
  361 PLALVYATAL PALAIIGITV ASALIVGGIS YGAAYKSSEH SLNSKLSEVR CSNVDGNKQT 420
  421 V

Type	Start	End	Confidence
Cytoplasmic	1	344	0.83
Transmembrane Helix	345	367	0.89
Non-Cytoplasmic	368	372	0.62
Transmembrane Helix	373	395	0.92
Cytoplasmic	396	421	0.83