YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115491959, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.95
Transmembrane Helix	43	62	0.88
Non-Cytoplasmic	63	76	0.69
Transmembrane Helix	77	100	0.83
Cytoplasmic	101	113	0.66
Transmembrane Helix	114	148	0.56
Non-Cytoplasmic	149	172	0.81
Transmembrane Helix	173	191	0.92
Cytoplasmic	192	199	0.76
Transmembrane Helix	200	218	0.92
Non-Cytoplasmic	219	236	0.82
Transmembrane Helix	237	258	0.91
Cytoplasmic	259	277	0.87
Transmembrane Helix	278	302	0.85
Non-Cytoplasmic	303	326	0.91
Transmembrane Helix	327	347	0.87
Cytoplasmic	348	367	0.79
Transmembrane Helix	368	386	0.94
Non-Cytoplasmic	387	394	0.84
Transmembrane Helix	395	417	0.89
Cytoplasmic	418	440	0.90
Transmembrane Helix	441	465	0.81
Non-Cytoplasmic	466	475	0.76
Transmembrane Helix	476	495	0.92
Cytoplasmic	496	557	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFKQWVEK IEVESEPGLT NTQLMLTNHD LRPVEPERRQ WRWWNFIAFW VADSLNINTW  60
   61 MISSSMIVDG LSWWQSWICV WVGYFIAACF VCLTGRIGAV YHISFPVVCR STFGIWGSFW 120
  121 PVFNRAAMAV IWYGVQGYIG GQCVTLMIRA IWPSYNNIPN SIPASSGVTT RDFVSFFLFW 180
  181 LLSLPALWFP VHKIRHLFTV KAVYSPIAAI AFFAWAISRA HGLGPIVHQS HTVHGSTLAW 240
  241 AVIKSIMSCL GNFATLIVND PDFSRFSKTP KDALWSQLFT IPIGFGITSF IGIIASSSST 300
  301 VIFGETVWNP LDLLGKFLEG ASSAERFGIF VISTGFALAQ LGTNISANSV SAGTDMTALL 360
  361 PRYLTIRRGS YICAAVGLAM CPWNLVSSSN QFTTYLSAYS IFLSSIAGPM ICDYYIVRKG 420
  421 YLQLKDLYSA RPGSPYRHFF GFSWQAYASY ISGILVNIVG FAGAVGRTVP VGAQYIYNIN 480
  481 YFSGIIVSMV MYYILTRLFP VAATSDTWNE VDVDVDGLSV ADGVEVEPYT SYEVPEPVKS 540
  541 DSSSEHKGPK AGSAAVY