YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115385264, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESRQQGAI ETAQEAAQHP SQDAAQAAEK VLVEETRKAG IPAYQFDPDA SPEEKAAVAE  60
   61 SRVPPGFHHE KKPKATAVIT DKDDGSPDQY DLPPPRSATD MLEEKANETP AETKADAMDE 120
  121 DLRWARDRTG WAPQFEKPMT EEEKAEGTLL DHQDFLESKL DDKFFGDWYH NAGVIVFACL 180
  181 SSWIIAVLGG GLAWVFIVMA ACSTYYRTSI RRVRRNFRDD VNREMAKQRL ETDTESLEWI 240
  241 NSFLVKFWPI YAPVLCDTII NSVDQVLSTS TPAMLDSLRL KTFILGSKPP RLEHVKTYPK 300
  301 TEVDTVIMDW KFSFTPNDTM DLTARQLKNK INPKVVLEVR LGKGVVSKGL DVIVEDMACN 360
  361 GLMRVKVKLQ VPFPHIERVD VCFLERPEID YVCKPLGGDT LGFDINFIPG LETFIKEQIH 420
  421 NNLGPMMYAP NVFPVEIAKM LAGNAVDQAI GVVAITLHGA RSLRNPDKFA GTPDPYAVVS 480
  481 LNNRTELGRT KTIRDTDSPR WNETIYVIIT SFSDSLTIAP YDWNEFRKDK ELGTATFPLD 540
  541 RLEEEPEHES VYLEVLASGR SRGSIHADIR FFPVLEGRQL ENGEMEPPPE LNTGIARFTV 600
  601 EQAKDLDGSK SIVGQLNPYG VLLLNGKEIH ITNKLKRTNN PIFQNASKEF LVTDRKNARL 660
  661 GLVIKDDRDL SKDPILGSYQ IKMNDMLKMM EKGQDWFHLH GAKTGRAKMT LQWKPVALGG 720
  721 VSGSAGYVDP IGVMRFHFKS ASNLRNLETI GKSDPYARVL LSGYMKARTV TFRNTLDPEW 780
  781 DEVVYVPIHS PREKVTIDVM DEESVGSDRT LGSVELSVAD YVHENENGEY EVDDEMQPIS 840
  841 SPLRIGSGTP KGVINYTVAF YPAVPVVNPE DEVEEEEVEA ELNGEAGGSD APRKSVDSRR 900
  901 KPAHAKTLST DSKVSAKTLT TNGDAKSSRQ SFESHAKDSD AMSVRSIKEV PKIHIGVEDL 960
  961 SQYESGFLVF KFHEAQLAGP NVHVEVVMDD YMFPAYTSHK LRSKSVKIED IGDAFVRELE1020
 1021 FSKITLRLVE KSNTKDDNEE HTLAKLTGDT YSTLQRILYT PTELVLRGNE GELSKITVSA1080
 1081 RYIPVRMKLD PRESINNMGT LRVNVLDAAD LPSADRNGFS DPYCKFRLDG KELHKTKVQK1140
 1141 KTLHPAWNEF FETQIKTRIG ADFRVDVYDW DFGDRADYLG GAQIPIDTLE PFKNTEVTLP1200
 1201 LDGKSGAIRL NMLFKPTYVM RSRQGSSTFA GNFATPGKIV GAPVKGVGIV GGGVIKGASF1260
 1261 LGRGIISRFR NDDASISEAD EIAGDAAAPS VVVEGSPAPS ETANGNGLQH SRTRSVASHY1320
 1321 GDRMGLGGAG KGESGTATIT VVSASDYPPS ANVRVYVKAI TPKGEKEVLK SKAHKASGGG1380
 1381 PVQFDASHET CRVHNTTADV QYRVRVVDHA TFGSDSVLGE GMFMVADQGS GLGQDKAVQA1440
 1441 GSGTVTIRSS FAATETSLRP GTAHSTAGDG ASEVVDSPES KKGRRSFLSK RSVSGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle