YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114193057, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.99
Transmembrane Helix	85	108	0.87
Non-Cytoplasmic	109	114	0.77
Transmembrane Helix	115	141	0.80
Cytoplasmic	142	160	0.69
Transmembrane Helix	161	183	0.76
Non-Cytoplasmic	184	193	0.78
Transmembrane Helix	194	212	0.96
Cytoplasmic	213	221	0.81
Transmembrane Helix	222	244	0.88
Non-Cytoplasmic	245	264	0.89
Transmembrane Helix	265	288	0.86
Cytoplasmic	289	306	0.89
Transmembrane Helix	307	328	0.92
Non-Cytoplasmic	329	364	0.89
Transmembrane Helix	365	387	0.82
Cytoplasmic	388	407	0.94
Transmembrane Helix	408	426	0.97
Non-Cytoplasmic	427	435	0.82
Transmembrane Helix	436	459	0.89
Cytoplasmic	460	480	0.93
Transmembrane Helix	481	502	0.93
Non-Cytoplasmic	503	519	0.90
Transmembrane Helix	520	541	0.91
Cytoplasmic	542	587	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDHIEPKA GPTSSSDSTP PAYGESVSTR PGIGRRIIDS FKRDPNAHVT TRATSGADGK  60
   61 SFDIENAALQ TAQSPLQRSL KSRHLQMIAI GGSIGTGLFV GSGKVLAVGG PASVLIAYAL 120
  121 IGCMLYCTVH ALGEMAVLFP VAGSFAHYST RFIDPAWGFA MGWNYALQWL VVLPLEIVAA 180
  181 SITVDYWESS ISNAAWVAIF WTVIVSINLF GVRGYGEAEF VFSLIKVIAV IGFIILGIIL 240
  241 NCGGGPQGGY IGGKYWHDPG AFHNGFKGLC SVFVNAAFAF AGTELVGLAA AETANPRKSL 300
  301 PTAVRQVFWR ISLFYIVSLT LVGLLVPYTN PQLLNGKSSA DAKASPFVIA IKNAGINVLD 360
  361 SIMNVVIMIA VLSVGNASVY GSSRTLAALA EQGQAPRFLA YIDRKGRPLW SICIASALGL 420
  421 LGFLSASDKQ EVAFEWMMAI SGLSSIFTWG SICLAHIRFR RAWKLQGHSL NELAFQSQPG 480
  481 LIGSWIGFIF NCLVLVAQFW VGFAPIGYSD MTTGELVESW FSVYLAAPVV ILCYIPYKLW 540
  541 YKTPFLRAKD MDLQTGRREL DIQYLIEQER AEQAEWPMWK KAYKIFC