YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115401822, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.89
Transmembrane Helix	94	114	0.86
Non-Cytoplasmic	115	165	0.78
Transmembrane Helix	166	188	0.77
Cytoplasmic	189	198	0.84
Transmembrane Helix	199	222	0.85
Non-Cytoplasmic	223	228	0.65
Transmembrane Helix	229	247	0.81
Cytoplasmic	248	266	0.82
Transmembrane Helix	267	288	0.83
Non-Cytoplasmic	289	303	0.74
Transmembrane Helix	304	325	0.83
Cytoplasmic	326	335	0.71
Transmembrane Helix	336	357	0.87
Non-Cytoplasmic	358	414	0.85
Transmembrane Helix	415	436	0.92
Cytoplasmic	437	466	0.85
Transmembrane Helix	467	487	0.94
Non-Cytoplasmic	488	494	0.63
Transmembrane Helix	495	515	0.86
Cytoplasmic	516	577	0.48
Transmembrane Helix	578	602	0.82
Non-Cytoplasmic	603	648	0.69
Transmembrane Helix	649	667	0.95
Cytoplasmic	668	676	0.76
Transmembrane Helix	677	699	0.84
Non-Cytoplasmic	700	724	0.83
Transmembrane Helix	725	747	0.91
Cytoplasmic	748	788	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKTKDTAV ITSPVDEAAP EEAAIHLKNL RSEHAWDPNL PDEVADEIDG ALNTDDKGTK  60
   61 LEVTQELLDN SPYPEVRAAV VNYDEGGHSN TIRAWTIGLL FATIGSALNM LFSLRQPYII 120
  121 IPSYVAQVVA YPVGKAWEKV MPNKVFRLFG IECNLNPGPF SKKEHTLIVV MANATFGGGA 180
  181 AYSTDVLLAQ RAFYKQRYGW PFEIFLTISS QMLGFGVAGF FHRFLVTPGA MIWPSTLINT 240
  241 TLFTALHDHS KPDPRKVSGW TIGKYRMFLY CMIGSFVWYW FPGYIAPFLS VFAWVTWIKP 300
  301 KNVVINQLFG GWTGLSLIPM TFDWTQVSGF NFSPLIAPWH AIANTLIGMV VFFWITTSGL 360
  361 HYSGVFYSKY LPISDSNSFD NTGQHYNVSK ILTPQMTFDE QKYKSYSPLF LSTTFVLNYG 420
  421 LAFATMIAIL VHTALFHGKE TWTRLRNFRR IEEDVHARLM SRYPSVPLWW YGAVVLVMVG 480
  481 MALGVSLGYP THLSWWALFV ALLIGSVWFL PCGIVQATTN ISIGLNVITE FIIGYMQPGR 540
  541 PMAMMLFKTY GYITMLQGTY FCQDMKLGHY MKVPPRLTFA AQMIACLWCS VVQVAVMNWA 600
  601 LATIPGICTT TQPDHYQCPN GRVFFNASII WGVIGPERMF SSGQLYSSLM YCWLAGALLP 660
  661 VLIYVGARVF PRSRIRFLSA PIIFGGAGLI PPATPLNYLT WGIVGLIFNK FIRDRWRGWW 720
  721 MQYNYVLSAG LDVGLALCTI LIFLALNMTK TTFPSWWGTD IASNTLDAEG TAVQIVLPDG 780
  781 EKFGPKSW