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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|59276028, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMCAAAAAGA GGSGILSSSS HSMGLGVRVI PGAGNDFAPI GSGMGSCPVV GARSDCRSRY  60
   61 QLLLSGRALA ERYRRIYTTA INDKEQGLNL GRGKKALSKK KLKRRQKVKS KVKTRTKTDT 120
  121 LDGAFPVPDI KLHSNPSAFN VYCNVRHCVL DWQQKEAALA LASRNSVQSG DSDSEEEEEY 180
  181 REPFVKLPKI IGIGLCGVFE LIKETRFSHP SLCLRSLQAL LDMLQGQQPE SFQTEPPDVL 240
  241 ESLFHLLLET TVRSTGMNDP TGQTLTALSC ACLFSLVVAW GDTGKTLQAV SAILTNNGSH 300
  301 ACQTIQVPTI LNALQRSVQA VLVGKIQIQE WFGNGIKRAA LMNKWVLKEV NIDDDEHCLL 360
  361 QTDGSFLYLL CKDGLYKVGS GYSGTVRGHV YNSTSRIRNR KEKRSWLGFA QGCLLYRDMN 420
  421 SHNMAAIKIN PETLEQEGTI TVPGLQADGQ NIIFTDGEYI NQIAACKDDG FVVRIYATSS 480
  481 DPALQQELQL KLARKCLHAC GISLFDLEKD LHIISTGFDE EAALIGAGRE FALMKTASGK 540
  541 IYYTGKYQSL GIKQGGPSSG KWVELPVTKS PKIVQFSVGH DGSHALLVAE DGSVFFTGSA 600
  601 SKGEDGESTK SRRQPKPYKP KKMIKLETKM AVYTACNNGS SSIVTKDGEL YMFGKDAIYS 660
  661 DSTCQVSDLK GHFVTQVAMG KAHTCVLTKS GEVWTFGVNN KGQCGRDTGA MSQAGKAFGV 720
  721 ENMATAMDED LEDELDEKEE KSMMCQPGMH KWKLDQCMVC TVCGDCTGYG ASCVSSGRPD 780
  781 RVPGGICGCG SGESGCSSCG CCKACARELD GQEARQRGIF DAVKEMIPLD LLLGVNIEEH 840
  841 IQIRQEEKRQ RINRRHRLEE GRGPLVFPGP LFMNQREQVL ARLRPLQAVK LMREKLKDGS 900
  901 SERGDKDASK ITTYPPGAVR FDCELRAVQV SCGFHHSVVL MENGDVYTFG YGQHGQLGHG 960
  961 DVNSRGSPTL VQALPGPSTQ VTAGSNHTAV LLMDGQVFTF GSFSKGQLGR PILDMPYWNA1020
 1021 KPSPMPNIGA KYGRKATWIG ASGDQTFLRI DEALINSHVL ATSEIFANKH IIGLVPTSIS1080
 1081 EPPPFKCLLI NKLDGSCRTF NDSEQEDLQG FGLCLDPVYD VIWRFLPVTR EMCCYNAVIA1140
 1141 DARVPTASDI QALCSILSPE LALPSGSHAS TTRSHGALHI LGCLDTLAAM QELKMGVASA1200
 1201 EEETQAVMKV YSKEDYSVVN RFESHGGGWG YSAHSVEAIR FCADADILLG GLGLFGGRGE1260
 1261 YTAKIKLFEL GPDGGDHETD GDLLAETDVL AYDCAAREKY AMMFDEPVLL QLGWWYVAWA1320
 1321 RVSGPSSDCG SHGQATITTD DGVVFQFKSS KKSNNGTDVN AGQIPQLLYR LPSNDGNASK1380
 1381 GKQQTSEPVH ILKRTFARTV SVDCFESLLS ILHWSWTTLV LGVEELRGLK GFQFTATLLD1440
 1441 LERLRFVGTC CLRLLRVYIC DIFPISASTK AIVEESSKLA ECVGKTRSLL KKILSEGMDN1500
 1501 CLTKLDNDPQ GYLSQPLTLL EAVLQECHNT FTACFHSFYP TPALQWACLC DLLNCLDQDI1560
 1561 QEANFRTSSS RLLAAVMSAL CNTSVKLTSI LPIAYDGEVL LRSLVKQVST ENDSALAHRF1620
 1621 PLLVAHMEKL SHTEENLMGM TTFREVLEKM LVIVVLPVRK SLRKEVELFS PHLVSNTCGL1680
 1681 LASIVSELTA SALGSEVDGL NSLHSVKATP NRFTKTSQGR SWNTGNGSPD AICFTVDKPG1740
 1741 VVLVGFCVYG GGGIHEYELE VLADDAQTEH PGDSAHSHRW TSLELVKGTY CTDDSPSDIA1800
 1801 EIRLDKAVPL KENVKYAVRL RNYGSRTANG DGGMTTVQCS DGVAFTFSTC SLSSNGTNQT1860
 1861 RGQIPQILYY RSEYDGDLQS QLLSKANEED KNCSRALSVV SVVVRAAKDL LHRAFAVDVE1920
 1921 DIPELLSSSS LFSMLLPLIL AYIGPVAASV PKAAVEVFGL VQELLPAVSA LNQKYAPPTF1980
 1981 NPNQSTDSTT GNQPEQGLSA CTTSNHYAVL ESDHPYKQAG VTQYKVSFPD CVRWMTVEFD2040
 2041 PQCGTAQPED VLRLLIPSRS LHFSGLSSKA LAHETINSWT ELKKFSGSSG WPTAVLVLPG2100
 2101 NEALFSLETA SDYVKDEKAS FYGFKCVAVG YEFNPGLDEG IIQLEKELAY LGSVCAAALM2160
 2161 KKDLALPIGN ELEEDLEILE EASLQVCKSH SGLLGKGLAL SHSPTILEAL EGNLPLHLQT2220
 2221 NEHSFLEDFI TCVQSSSGGR LARWLQPDSY ADPQKTSLIL NKDDIRCGWP TTVVVQTKDQ2280
 2281 YGDVVHVPNM KVEVKAVPVS QKKSIQQENM KKLQRLPGTS SNSATGTDLT FGGHPAPKLE2340
 2341 ATYEPMIIKE ARYIAITMMK AYENYSFEEL RFASPTPKRP SENMLIRANT DGTYSANWTP2400
 2401 GAVGLYTIHV TIDGIEIDAG LEVEVKAPPK GMIPPGTQMV KPKAEPQPSK VRKFVAKDSA2460
 2461 GLRVRSHPSL QSEQIGIVQV NGTITFIDEI HNDDGVWLRL NDETVKKYVP NMNGYTEAWC2520
 2521 LSFNQHLGRS LLVPVDVINS EGTWVQLDKN SVVEFCESDE GEAWSLARDR GGNQYLRHVE2580
 2581 EQAVLEHGAQ TPPPSPFSVQ AFNRGMASSG AQGFDYGISN NKGDRDNMAS WSVSPGSKHR2640
 2641 QESRSSKTDS HSNRSVDQVK SKNNESLSAS EALILKSDTG KLRSDSHSRS HSPNHNTLQA2700
 2701 LKADGRTSGL RAESPNPGSR SSSPKQKTFT SGRSSPSSTS SPRSSSPHDK NLPAKVSPSK2760
 2761 VHLDPPRERS KSDSYTLDPD TLRKKKVPLM EPLRGRSTSP KPKLPPKESK GGSSNAENRA2820
 2821 PSPHVVQENL HSEVVEVCRS SALLSNDEGN DENSELHNAE EGSSKVHFSI GKAPVKEELE2880
 2881 SRSSPKVSRK TSSRHVRPKK DKSGPLFKGE NVRPTEPAKQ AMSPSVAECA RAVFAAFLWH2940
 2941 EGIVHDAMAC SSFLKFNPEL TKEHAPIRNS LSCQQGFDEK ESKLKNRHSL EISSALNMFN3000
 3001 ISPHGPDISK MGSINKNKVL SMLKEPPLPE KCEDGKESVS YEMTSHSSMR SKSILPLTLQ3060
 3061 HLVAFWEDIS MATIKAATQN MIFPSPGSSA ILKKKENEKD SKKTKKEKKK KEKAEVRPRG3120
 3121 NLFGEMAQLA MGGPEKDTIC ELCGESHPYP VTYHMRQAHP GCGRYAGGQG YNSIGHFCGG3180
 3181 WAGNCGDGGI GGSTWYLVCD RCREKYLREK QTAAREKVKQ SRKKPLQVKT PRALPTMEAH3240
 3241 QVIRANALFL LSLSSAAEPS LLCHHPPKPF HSHLPSLKEG VSEELPNKMG CLYLQTLARQ3300
 3301 HTENFGVYQD DNLFQDEMRY LRSTSVPAPY ISVTPDACPN VFEEPGSNMK SMPPSLETSP3360
 3361 ITDSDTAKRT VFQRSYSVVA SEYDKQHSAS PARVKAVPRR RVHSGDAEVG SSLLRHPSPE3420
 3421 LSRLISAHGS LSKGERNFQW PVLAFVIQHH DLEGLEVAMK HALRKSACRV FAMEAFNWLL3480
 3481 CNVTQTTSLH DILWHFVASL TPSPFETEEE EDEETKGNKE NLEQEKDLGV CEHPLSDIII3540
 3541 AGEAAHPLPH TFHCLLQTIS DLMMSLPSGS SLQQMALRCW SLKFKQSDHQ FLHQSNVFHH3600
 3601 INNILSKSDD GDSEESFNIS VQSGYEAISQ ELCVVTCLKD LTSVVDIKTS SRPAMIGSLT3660
 3661 DGSTETFWES GDEDKNKTKS ITISCVKGIN ASYVSVHVDN SRDIGNKVTS MIFLCGKAVE3720
 3721 DLCRIKQIDL DSRHMGWVTS ELPGGDHHVI KIELKGPENT LRVRQVKVLG WKEGESIKIA3780
 3781 GQISASVAQQ KNCEAETLRV FRLITSQVFG KLICGDAEPT PEQEEKNLLS SPEGEDKAPS3840
 3841 DADLKEHMVG IIFSRSKLTN LQKQVCAHIV QAIRMEATRV REEWEHAISS KENANSQPSD3900
 3901 DDASSDAYCF ELLSMVLALS GSNVGRQYLA QQLTLLQDLF SLLHTASPRV QRQVTSLLRR3960
 3961 VLPEVTPMRL ASVIGVKALP PADISDIIHS TEKGDWTKLG ILDMFLGCIA KALTVQLKAK4020
 4021 GTTIVGTAGM AAGKGVTTVT LPMIFNSSYI RRGESHWWMK GSTPPQIAEI IIKLVKDMAA4080
 4081 GHLSDAWSRV TKNAIAETII ALTKMEEEHR SPVRCIATTR LWLALASLCV LDQDHVDRLS4140
 4141 SGRWMGKDGQ QKQMPMCDNH DDGETAAIIL CNACGNLCTD CDRFLHLHRR TRTHQRQVFK4200
 4201 EEEEAIKVDL HEGCGRTKLF WLMALADSKT MKAMVEFREH TGKPASSSSD ACRFCGTRHG4260
 4261 TELSAVGSVC SDQDCQEYAK LACSKTHPCG HPCGGVKNED LCLPCLHGCD KTATCLKQDA4320
 4321 DDMCMICFTE ALSAAPAIQL DCSHVFHLQC TRRVLENRWL GPRITFGFMS CPICKNKINH4380
 4381 LVLKDLLDPI KELYEDVRRK ALMRLEYEGL HKSEAITMSG ARFFNNPAGF AMNRYAYYVC4440
 4441 FKCKKAYFGG EARCDAEAGQ GDDYDPRELI CGACSDVSRA QMCSKHGTDF LEYKCRYCCS4500
 4501 VAVFFCFGTT HFCNACHDDF QRMTSVPKEE LPHCPAGPKG KQLEGSECPL HVVHPPTGEE4560
 4561 FALGCGVCRN AHTF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle