YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55962156, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISTVILEM CLLWGQVLST GGWIPRTTDY ASLIPSEVPL DPTVAEGSPF PSESTLESTV  60
   61 AEGSPISLES TLESTVAEGS LIPSESTLES TVAEGSDSGL ALRLVNGDGR CQGRVEILYR 120
  121 GSWGTVCDDS WDTNDANVVC RQLGCGWAMS APGNAWFGQG SGPIALDDVR CSGHESYLWS 180
  181 CPHNGWLSHN CGHGEDAGVI CSAAQPQSTL RPESWPVRIS PPVPTEGSES SLALRLVNGG 240
  241 DRCRGRVEVL YRGSWGTVCD DYWDTNDANV VCRQLGCGWA MSAPGNAQFG QGSGPIVLDD 300
  301 VRCSGHESYL WSCPHNGWLT HNCGHSEDAG VICSAPQSRP TPSPDTWPTS HASTAGPESS 360
  361 LALRLVNGGD RCQGRVEVLY RGSWGTVCDD SWDTSDANVV CRQLGCGWAT SAPGNARFGQ 420
  421 GSGPIVLDDV RCSGYESYLW SCPHNGWLSH NCQHSEDAGV ICSAAHSWST PSPDTLPTIT 480
  481 LPASTVGSES SLALRLVNGG DRCQGRVEVL YQGSWGTVCD DSWDTNDANV VCRQLGCGWA 540
  541 MSAPGNARFG QGSGPIVLDD VRCSGHESYL WSCPHNGWLS HNCGHSEDAG VICSASQSRP 600
  601 TPSPDTWPTS HASTAGSESS LALRLVNGGD RCQGRVEVLY RGSWGTVCDD YWDTNDANVV 660
  661 CRQLGCGWAM SAPGNARFGQ GSGPIVLDDV RCSGHESYLW SCPHNGWLSH NCGHHEDAGV 720
  721 ICSASQSQPT PSPDTWPTSH ASTAGSESSL ALRLVNGGDR CQGRVEVLYR GSWGTVCDDY 780
  781 WDTNDANVVC RQLGCGWATS APGNARFGQG SGPIVLDDVR CSGHESYLWS CPHNGWLSHN 840
  841 CGHHEDAGVI CSASQSQPTP SPDTWPTSRA STAGSESTLA LRLVNGGDRC RGRVEVLYQG 900
  901 SWGTVCDDYW DTNDANVVCR QLGCGWAMSA PGNAQFGQGS GPIVLDDVRC SGHESYLWSC 960
  961 PHNGWLSHNC GHHEDAGVIC SAAQSQSTPR PDTWLTTNLP ALTVGSESSL ALRLVNGGDR1020
 1021 CRGRVEVLYR GSWGTVCDDS WDTNDANVVC RQLGCGWAMS APGNARFGQG SGPIVLDDVR1080
 1081 CSGNESYLWS CPHKGWLTHN CGHHEDAGVI CSATQINSTT TDWWHPTTTT TARPSSNCGG1140
 1141 FLFYASGTFS SPSYPAYYPN NAKCVWEIEV NSGYRINLGF SNLKLEAHHN CSFDYVEIFD1200
 1201 GSLNSSLLLG KICNDTRQIF TSSYNRMTIH FRSDISFQNT GFLAWYNSFP SDATLRLVNL1260
 1261 NSSYGLCAGR VEIYHGGTWG TVCDDSWTIQ EAEVVCRQLG CGRAVSALGN AYFGSGSGPI1320
 1321 TLDDVECSGT ESTLWQCRNR GWFSHNCNHR EDAGVICSGN HLSTPAPFLN ITRPNTDYSC1380
 1381 GGFLSQPSGD FSSPFYPGNY PNNAKCVWDI EVQNNYRVTV IFRDVQLEGG CNYDYIEVFD1440
 1441 GPYRSSPLIA RVCDGARGSF TSSSNFMSIR FISDHSITRR GFRAEYYSSP SNDSTNLLCL1500
 1501 PNHMQASVSR SYLQSLGFSA SDLVISTWNG YYECRPQITP NLVIFTIPYS GCGTFKQADN1560
 1561 DTIDYSNFLT AAVSGGIIKR RTDLRIHVSC RMLQNTWVDT MYIANDTIHV ANNTIQVEEV1620
 1621 QYGNFDVNIS FYTSSSFLYP VTSRPYYVDL NQDLYVQAEI LHSDAVLTLF VDTCVASPYS1680
 1681 NDFTSLTYDL IRSGCVRDDT YGPYSSPSLR IARFRFRAFH FLNRFPSVYL RCKMVVCRAY1740
 1741 DPSSRCYRGC VLRSKRDVGS YQEKVDVVLG PIQLQTPPRR EEEPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle