YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56562199
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.77
Transmembrane Helix	51	69	0.53
Non-Cytoplasmic	70	81	0.53
Transmembrane Helix	82	105	0.80
Cytoplasmic	106	140	0.68
Transmembrane Helix	141	167	0.80
Non-Cytoplasmic	168	174	0.62
Transmembrane Helix	175	193	0.91
Cytoplasmic	194	200	0.49
Transmembrane Helix	201	220	0.71
Non-Cytoplasmic	221	234	0.80
Transmembrane Helix	235	256	0.78
Cytoplasmic	257	269	0.83
Transmembrane Helix	270	294	0.89
Non-Cytoplasmic	295	315	0.97
Transmembrane Helix	316	340	0.88
Cytoplasmic	341	355	0.91
Transmembrane Helix	356	376	0.91
Non-Cytoplasmic	377	381	0.80
Transmembrane Helix	382	404	0.90
Cytoplasmic	405	423	0.92
Transmembrane Helix	424	446	0.90
Non-Cytoplasmic	447	483	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAQKQAEEA IVSNFSEAHD HEGKEDHHQD KEEENTSLFN VKNFLWHGGS VWDAWFSCAS  60
   61 NQVAQVLLTL PYSFSQLGLL SGILLQIFYG IVGSWTAYLI SVLYIEYRSR KEKENVNFKN 120
  121 HVIQWFEVLD GLLGPYWKAV GLAFNCTFLL FGSVIQLIAC ASNIYYINDN LDKRTWTYIF 180
  181 GACCATTVFI PSFHNYRIWS FLGLGMTTYT AWYLTIAAVV HGQKEGVTHT APTKLVLYFT 240
  241 GATNILYTFG GHAVTVEIMH AMWKPQKFKY IYLFATVYVF TLTIPSATSV YWAFGDELLN 300
  301 HANAFSLLPK NAWRDAAVIL MLIHQFITFG FACTPLYFVW EKVIGMHDTK SICLRALARL 360
  361 PVVIPIWFLA IIFPFFGPIN SAVGALLVSF TVYIIPSLAH MLTYRKASAR QNAAEKPPFF 420
  421 LPSWTAMYVI NSFIVVWVLV IGFGFGGWAS MTNFVRQVDN FGLFAKCYQC NSPKLPAAAA 480
  481 PHH