YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834314, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.78
Transmembrane Helix	13	32	0.68
Non-Cytoplasmic	33	58	0.75
Transmembrane Helix	59	78	0.93
Cytoplasmic	79	88	0.62
Transmembrane Helix	89	107	0.90
Non-Cytoplasmic	108	169	0.72
Transmembrane Helix	170	187	0.65
Cytoplasmic	188	197	0.66
Transmembrane Helix	198	220	0.91
Non-Cytoplasmic	221	239	0.67
Transmembrane Helix	240	259	0.79
Cytoplasmic	260	270	0.53
Transmembrane Helix	271	293	0.66
Non-Cytoplasmic	294	311	0.61
Transmembrane Helix	312	336	0.86
Cytoplasmic	337	341	0.56
Transmembrane Helix	342	364	0.60
Non-Cytoplasmic	365	365	0.46
Transmembrane Helix	366	386	0.82
Cytoplasmic	387	403	0.73
Transmembrane Helix	404	424	0.78
Non-Cytoplasmic	425	428	0.76
Transmembrane Helix	429	449	0.89
Cytoplasmic	450	467	0.80
Transmembrane Helix	468	487	0.92
Non-Cytoplasmic	488	496	0.74
Transmembrane Helix	497	517	0.88
Cytoplasmic	518	718	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAKAPKPW TLYLPNHSSL FPLFVFILSQ CYRISADDGG IEELATEKEA EESHRQDSVN  60
   61 LLTFILLLTL TILTIWLFKH RRVRFLHETG LAMIYGLLVG VILRYGIPST SYHNKTPPSC 120
  121 MLKEGPVSTV LLNVSGKFFE YTLKGEINLR EIHSVEQNDM LRKLTFDPEV FFNILLPPII 180
  181 FHAGYSLKKR HFFRNLGSII TYAFLGTAIS CFVIGNLMYG VVKLMQVLGQ LTDKFYYTDC 240
  241 LFFGAIISAT DPVTVLAIFN ELHADGDLYA LLFGESVMND AVSIVLSSSI VAYQPSGANT 300
  301 HTFDASAFFK SVGVFIGIFS GSFAMGAVTG VVTALVTKFT KLHCFPLLET ALFFLMSWST 360
  361 FLLAEACGFT GVVAVLFCGI TQAHYTYNNL SEESTKRTKQ LFEVLHFLAE NFIFSYMGLA 420
  421 LFTFQNHVFS PIFIVGAFLA IFIGRALNIY PLSFLINLGR RHKIRGNFQH MMMFAGLRGA 480
  481 MAFALAIRDT ATYARQMMFT TTLLIVFFTV WVFGGGTTPM PSWLHIRVGE SSDAEKERMR 540
  541 RLWNYDRVGV DPDQDLQPCG DSFQVLQGDG SQLEGQSKTK QESAWLFRLW YTFDHNYLKP 600
  601 ILTHSGPPLT STLPACCGPL ARCLTSPQAY ETHEPLRDND SDLILNEGDL TLTYGDTAIT 660
  661 ANGASSSSGP EGSAGIWGLN GKRSDSTSEV ALERELDTRE HELLSRGTRL VFPIEDHA