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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56207679, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNSYSGVK NSVAEPNHNG EFGCSLKELR SLMELRGAEG LQKIQETYGD VNGLCNRLKT  60
   61 SAVDGLSGQP SDIEKRKAAF GQNFIPPKKP KTFLQLVWEA LQDVTLIILE VAAIVSLGLS 120
  121 FYKPPDAGDK NCVKGTGGEP EEEGETGWIE GAAILLSVVC VVLVTAFNDW SKEKQFRGLQ 180
  181 SRIEQEQKFS VVRGGQVIQI HVAEIVVGDI AQIKYGDLLP ADGILIQGND LKIDESSLTG 240
  241 ESDHVKKSLD KDAMLLSGTH VMEGSGKIVV TAVGVNSQTG IIFTLLGAGE DDDDEEEKEK 300
  301 KKEKERKKEK KNKKQDGSVE NRKKAKAQDG AAMEMQPLNS DEGADGEEKR KANLPKKEKS 360
  361 VLQGKLTKLA VQIGKAGLLM SAITVIILVV LFVVDTFWVD KIPWDSGCIP IYIQFFVKFF 420
  421 IIGVTVLVVA VPEGLPLAVT ISLAYSVKKM MKDNNLVRHL DACETMGNAT AICSDKTGTL 480
  481 TMNRMTVVQV FIADKHYRKV PEPDVVPAST MDLLIVGISV NCAYTTKIMS PEKEGGLNRQ 540
  541 VGNKTECALL GFALDLKKDY QAVRNEIPEE KLYKVYTFNS VRKSMSTVLK NDDGSYRMFS 600
  601 KGASEILLKK CFKILTSTGE AKVFRPRDRD DMVKRVIEPM ASEGLRTICL AYRDFPASEG 660
  661 EPDWDNEADI LTRLTCVCVV GIEDPVRPEV PDAIRKCQRA GITVRMVTGD NLNTARAIAT 720
  721 KCGILQVGDD FLCLEGKEFN RRIRNEKGEI EQERIDKIWP KLRVLARSSP TDKHTLVKGI 780
  781 IDSTVVEQRQ VVAVTGDGTN DGPALKKADV GFAMGIAGTD VAKEASDIIL TDDNFSSIVK 840
  841 AVMWGRNVYD SISKFLQFQL TVNVVAVIVA FTGACITQDS PLKAVQMLWV NLIMDTLASL 900
  901 ALATEPPTES LLLRKPYGRN KPLISRTMMK NILGHAVYQL IIIFTLLFAG EKMFNIDSGR 960
  961 YADLHAPPSE HYTIVFNTFV MMQLFNEINA RKIHGERNVF EGIFNNMIFC TIVFGTFVIQ1020
 1021 IVIVQFGGKP FSCVGLNIEQ WLWCIFLGFG CLLWGQVIST IPTSRLTFLK TAGHGTQKEE1080
 1081 IPDEELEELE DLDEIDHAER ELRRGQILWF RGLNRIQTQI RVVNAFRSSL SPYEGLEKPE1140
 1141 SRTSIHNFMT HPEFRIEDSE PHIPLIDDTD AEDDAPTKRN ATPTPPPPPS PNQNNNAVDS1200
 1201 GVHLFLDPSK SATPSAPGSP MHSLETSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle