YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55962301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.79
Transmembrane Helix	132	153	0.81
Non-Cytoplasmic	154	161	0.47
Transmembrane Helix	162	184	0.69
Cytoplasmic	185	216	0.46
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	328	0.54
Transmembrane Helix	329	350	0.93
Cytoplasmic	351	471	0.98
Transmembrane Helix	472	493	0.94
Non-Cytoplasmic	494	501	0.91
Transmembrane Helix	502	525	0.86
Cytoplasmic	526	534	0.78
Transmembrane Helix	535	555	0.86
Non-Cytoplasmic	556	597	0.50
Transmembrane Helix	598	621	0.88
Cytoplasmic	622	631	0.41
Transmembrane Helix	632	651	0.51
Non-Cytoplasmic	652	671	0.75
Transmembrane Helix	672	695	0.83
Cytoplasmic	696	1120	0.83
Transmembrane Helix	1121	1143	0.86
Non-Cytoplasmic	1144	1161	0.79
Transmembrane Helix	1162	1182	0.79
Cytoplasmic	1183	1191	0.72
Transmembrane Helix	1192	1212	0.90
Non-Cytoplasmic	1213	1259	0.81
Transmembrane Helix	1260	1279	0.92
Cytoplasmic	1280	1370	0.76
Transmembrane Helix	1371	1393	0.95
Non-Cytoplasmic	1394	1447	0.73
Transmembrane Helix	1448	1468	0.83
Cytoplasmic	1469	1480	0.68
Transmembrane Helix	1481	1504	0.83
Non-Cytoplasmic	1505	1571	0.49
Transmembrane Helix	1572	1595	0.83
Cytoplasmic	1596	1661	0.46
Transmembrane Helix	1662	1686	0.88
Non-Cytoplasmic	1687	1939	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGDEVPS RYGGGPGHAQ GGPGRGGSRQ GGPPGAQQRM YKQSMAQRAR TMALYNPIPV  60
   61 RQNCFTVNRS LFIFSEDNFV RKYAKKITEC TPFEYMILAT IIANCIVLAL EQHLPDGDKT 120
  121 PMSERLEDTE PYFIGIFCFE SGIKILALGF AFHKGSYLRN GWNVMDFVVV LTGILSTVGS 180
  181 DFDLRTLRAV RVLRPLKLVS GIPSLQVVLK SIMKAMIPLL QIGLLLFFAI LMFAIIGLEF 240
  241 YMGKFHTTCF DKITDEIREE FPCGEEVPAR ICPNGTVCKK YWLGPNYGIT QFDNILFAVL 300
  301 TVFQCITMEG WTDLLYYSND AAGSAWNWMY FIPLIIIGSF FMLNLVLGVL SGEFAKERER 360
  361 VENRSEFLKL KRQQQIEREL NGYLEWICKA EEVILADEDN DPDDRMPFDG SRRRPTIKKS 420
  421 KTDLLDAEDG DGDIGSPFAR GSLKSSKLEG SSFHKKERRL RFFIRRIVKT QAFYWTVLCL 480
  481 VGLNTLCVAV VHYDQPETLS DFLYFAEFIF LGIFMSEMCI KMYGLGTRPY FHSSFNCFDC 540
  541 IVICGSIFEV LWAMIQPGTS FGISVLRALR LLRIFKVTKY WASLRNLVVS LLNSMKSIIS 600
  601 LLFLLFLFIV VFALLGMQLF GGQFNFEAGT PPTNFDTFPA AIMTVFQILT GEDWNMVMYD 660
  661 GIESQGGVKK GMVFSVFFIV LTLFGNYTLL NVFLAIAVDN LANAQELTKD EQEEEQAANK 720
  721 KMALQTAKEV AEVSPLSAAN LSIAAKEQQK NHKGCKSVWE QRTSELRRQT LVNSREALYN 780
  781 ELDPEDRWKV SYSRHIRPDM KTHLDRPLVV DPQENRNNNT NKTRPGDGQP QHSHQLLHKQ 840
  841 PNFNEAETGG GGGSESWPAL ERGDSTGSRR SLLGSEHYEE GRESHRRHQH SQHCSQARQH 900
  901 RKAAEGGGEP GGRRHRSKAK ERGPECEHSD GGERKHRRHR HEGEGRKERG VRHRNRRDGH 960
  961 ASGPTLSTTR PIQKTLSRQD SQYSEDLDNA MNNKLATQPH DSLLNLANTA HSAGLAHTGT1020
 1021 ESSLILTNPS STIANVTSIG HLGMKPEYTA VDIPPMFPSS NAILQVNKNA NTEPLPKKED1080
 1081 TKGDDDDDEK DDGGPKPMPP YTSMFILTTT NPFRRLCHYI VTLRYFEMCI LLVIAMSSIA1140
 1141 LAAEDPVWPE SPRNNVLRYF DYVFTGVFTF EMLIKMVDLG LVLHQGSYFR DLWNILDFIV1200
 1201 VSGALVAFAF TGSSKGKDIS TIKSLRVLRV LRPLKTIKRL PKLKAVFDCV VNSLKNVLNI1260
 1261 LIVYMLFMFI FAVVAVQLFK GRFFYCTDES KEFERDCRGE YLVYERDNEV RSQKREWKKY1320
 1321 DFHYDNVLWA LLTLFTVSTG EGWPQVLKHS VDATYENQGP SPGYRMEMSI FYVVYFVVFP1380
 1381 FFFVNIFVAL IIITFQEQGD KMMEDYSLEK NERACIDFAI NAKPLTRHMP QNKQTFQYRM1440
 1441 WEFVVSPPFE YTIMALIALN TIVLMMKYDG ASLTYEDVLK YLNIVFTSLF SMECILKIIA1500
 1501 FGALNYFKDA WNIFDCVTVL GSITDILVTE LGNNFINLSF LRLFRAARLI KLLRQGETIR1560
 1561 ILLWTFVQSF KALPYVCLLI AMLFFIYAII GMQLFGNIKI EENSDSAITQ HNNFRTFFQA1620
 1621 LMLLFRSATG EAWHDIMLSC LGKKPCDILS DNPKPECGSE FAYLYFVSFI FLCSFLMLNL1680
 1681 FVAVIMDNFE YLTRDSSILG PHHLDEYVRI WAEYDPAACG RISYRDMYEM LRHMSPPLGL1740
 1741 GKKCPARVAY KRLLRMDLPV ADDNTVHFNS TLMALIRTAL DIKIAKGGVD KHQMDAELRK1800
 1801 EMMAIWPNLS QKNLDLLVTP HKSATDLTVG KIYAAMMIME YYRQSKAKRT QALHDEQNRT1860
 1861 PLMFQRLEPP SPSQDVGPGL TGLPDTQMHP ANHLPVDERI PESQSWVTAR AQEISQKAGN1920
 1921 WSPEGQHPDD TTDNRRQSQ