YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956984
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSAHKRTT TGLPTTTARG GRRGRQIQKT FNNVKITILC GFVTILVLRG TIGVNLSSSD  60
   61 ADAVNQNVIE ETNRILAEIR SDADPSDPDD AAAAETFFSP NATFTLGPKI TGWDLQRKAW 120
  121 LDQNPEYPNF VRGKARILLL TGSPPKPCDN PIGDHYLLKS IKNKIDYCRL HGIEIVYNLA 180
  181 HLDVELAGYW AKLPMIRRLM LSHPEVEWIW WMDSDAFFTD MVFELPLSKY DDYNLVLHGY 240
  241 PDLLFEQKSW IAVNTGSFLF RNCQWSLDLL DAWAPMGPKG PVREEAGKVL TANLKGRPAF 300
  301 EADDQSALIY LLLSKKDKWM DKTFLENSFY LHGYWAGLVD RYEEMIEKYH PGLGDERWPF 360
  361 VTHFVGCKPC GSYGDYPVEK CLSSMERAFN FADNQVLKLY GFRHRGLLSP KIKRIRNETV 420
  421 TPLEFVDQFD IRRHSSESRG SKS

Type	Start	End	Confidence
Cytoplasmic	1	30	0.65
Transmembrane Helix	31	50	0.62
Non-Cytoplasmic	51	443	0.99