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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPP2B_CHICK
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARWAQFLL FSLLSLPQVY CEYGMVHVLS EKGSSKGKDY CILFNSQWAH LPHDLGKASL  60
   61 LQLQDQTASV LCSPSDVPDG GFNNRIPMVM RGNCTFYEKV RLAQINGARG LLIVSRERLV 120
  121 PPGGNRSQYE EIDIPVALLS YSDMLDIVKS FGRSVKGAMY APNEPVLDYN MVIIFVMAVG 180
  181 TVAIGGYWAG SRDVKERYMK HKRDDGAEKH EDETVDVTPI MICVFVVMCC SMLVLLYFFY 240
  241 DHLVYVIIGI FCLAASIGLY SCLSPFVRRF PLGKCRIPDN NLPYFHKRPQ VRILLLAVFC 300
  301 ISVSVVWGVF RNEDQWAWVL QDALGIAFCL YMLKTIRLPT FKGCTLLLLV LFVYDVFFVF 360
  361 ITPFLTKTGE SIMVEVAAGP SDSATHEKLP MVLKVPRLNS SPLALCDRPF SLLGFGDILV 420
  421 PGLLVAYCHR FDIQVQSSRV YFVACTIAYG IGLLVTFVAL ALMQMGQPAL LYLVPCTLIT 480
  481 SFSVALWRKE LAMFWTGSGF AKDLPQPPLV IASVNCPQLP KDSNVPASQQ ETEEMANPTL 540
  541 HVKELHSPTL AAEEPADNDT KTEQSEVSIA QSEEAAGHNK DDLESKSLNL EQKQLE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle