YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109121236
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.40
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSTGSSGL YKAPLSKSLL LVPSALSLLL ALLLPHCQKL FVYDLHAVKN DFQIWRLICG  60
   61 RIICLDLKDT FCSSLLIYNF RIFERRYGSR KFASFLLGSW VLSALFDFLL VEAMQYFFGI 120
  121 TAASNLPSGF LAPVFALFVP FYCSIPRVQV AQILGPLSIT NKTLIYILGL QLFTSGSYIW 180
  181 IVAISGLMSG LCYNSKMFQV HQVLCIPSWM AKFFSWTLEP IFSSSEPTSE ARIGMGATLD 240
  241 IQRQQRMELL DRQLMFSQFA QGRRQRQQQG GMINWNRLFP PLRQRQNVNY QGGRQSEPAA 300
  301 PPPLEVSEEQ VARLMEMGFS RGDALEALRA SNNDLNVATN FLLQH

Type	Start	End	Confidence
Signal Peptide	1	37	0.40
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	57	0.58
Transmembrane Helix	58	72	0.37
Cytoplasmic	73	91	0.59
Transmembrane Helix	92	111	0.90
Non-Cytoplasmic	112	122	0.55
Transmembrane Helix	123	145	0.81
Cytoplasmic	146	163	0.59
Transmembrane Helix	164	188	0.81
Non-Cytoplasmic	189	197	0.57
Transmembrane Helix	198	216	0.45
Cytoplasmic	217	345	0.53