YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAR5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENRAMYLTT THEDRENSSF YEESYDGMNL SKLNLCEEVN STKYRRKTDN RCGQLDSLTS  60
   61 IKYAIVSLYI LVLLTIFGLC IAVSKSHASW RREEALLENV TRLGEQSETL QMSLSQIPSQ 120
  121 SDLLENIWKL ESLFHNHTEQ LRLLGLLTQG LERDIKDLQA FAEHTTDSVA QLWDHLSMIS 180
  181 HSSQRNSTHL GDELASTAGS IREQDALLKT MVGNVETLQE RLEDMGWTLQ TLNHSLGGDV 240
  241 SLHQIKIYEL QEKIVNVTHD TLGMKITQTH LEDQLRNEIQ VLNVVTADLR LKEWEHSMAL 300
  301 KNLTIFQGPP GPKGEKGDVG PLGPDGIPGW IGPRGLTGEK GVQGPRGLAG RNGQDGHNGD 360
  361 KGEVGPEGPK GVRGERGPKG EKGERGDKQG EKVEDAVVRL VNGSGPHEGR VEVLHDLRWG 420
  421 TVCDDVWDIK DGDVVCRMLG FRGAKEIHKT GRFGQGTGLI WMDDVACVGT EDSIDLCKFS 480
  481 GWGKTNCGHV EDAGVTCNV

Type	Start	End	Confidence
Cytoplasmic	1	62	0.83
Transmembrane Helix	63	83	0.86
Non-Cytoplasmic	84	499	0.90