YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834456, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.82
Transmembrane Helix	33	53	0.90
Cytoplasmic	54	72	0.78
Transmembrane Helix	73	94	0.88
Non-Cytoplasmic	95	103	0.74
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	134	0.68
Transmembrane Helix	135	154	0.91
Non-Cytoplasmic	155	164	0.74
Transmembrane Helix	165	185	0.89
Cytoplasmic	186	292	0.88
Transmembrane Helix	293	313	0.54
Non-Cytoplasmic	314	352	0.63
Transmembrane Helix	353	370	0.89
Cytoplasmic	371	429	0.61
Transmembrane Helix	430	454	0.72
Non-Cytoplasmic	455	455	0.34
Transmembrane Helix	456	480	0.77
Cytoplasmic	481	544	0.75
Transmembrane Helix	545	567	0.84
Non-Cytoplasmic	568	580	0.64
Transmembrane Helix	581	602	0.87
Cytoplasmic	603	970	0.74
Transmembrane Helix	971	994	0.78
Non-Cytoplasmic	995	1043	0.49
Transmembrane Helix	1044	1058	0.83
Cytoplasmic	1059	1059	0.00
Transmembrane Helix	1060	1074	0.64
Non-Cytoplasmic	1075	1128	0.55
Transmembrane Helix	1129	1158	0.80
Cytoplasmic	1159	1231	0.65
Transmembrane Helix	1232	1251	0.72
Non-Cytoplasmic	1252	1558	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSFCGNDR DSNAYSVDNG VLDNGCFVDA LNLVPHVFLL FITFPILFIG WGSQSSKVQI  60
   61 HHNTWLHFPG HNMRWILTFT LLFVHVCEIA EGIVSNTWME SNHLHLFMPA FMGFIAATTS 120
  121 VVYYHNIETA NFPKLLLALF IYWILAFITK MIKLWKFAEA SLGVQHLRFC ITALLVVLYG 180
  181 LLMAVEINVI RVRKYVFFAN PQRVKPPEDL QDLGVRFLQP FVNLLSKATY WWMNPLIIGA 240
  241 HKRPIELKKI GKLPIAMRAL TNYLRLKDSY EEQRQNTEDP EKSPSIWKSM YRAFGGSILL 300
  301 SSTFRYMADL LGFAGPLCIS GIVEHLHNST EIDRTNKTGN MTFGVYFMSS TELLQNTSVL 360
  361 AVLLFLALVL QRTFLQASYY VTIETGINLR GALLAMIYNK ILRLSTSNMS MGEMTLGQIN 420
  421 NLVAIETNQL MWFLFLCPNL WAMPVQIIMG VILLYYLLGN SALIGAGVIL LLAPVQYLIA 480
  481 TKLADIQKST LDYSTDRLKK TTEILKGIKL LKLYAWENIF CDRVEETRGK ELTSLKTFAL 540
  541 HTSMSIFMNA AIPIAAVLAT FVTHAYIEED RLSPAKAFAS LALFHILVTP LFLLSTVVRF 600
  601 AVKALVSVQK LSEFLQSDEI GDDSWRNGDM CMSLEVGKKY KYQGDTKAIN RKGRYRMDNY 660
  661 EQPVRRQLRP SETEDVAVQV NDGFFTWGSN LSTLSDINIR IPTGQLTMIV GQVGCGKSSL 720
  721 LLAMLGEMQT ISGKVYWSNK NRYSVAYATQ KSWLLNATVE ENITFGSPFN KQRYKAVIDA 780
  781 CSLQPDIDLL PFGDQTEIGE RGINLSGGQR QRICVARALY QNTNIVFLDD PFSALDIHLS 840
  841 DHLMQEGILK FLQDDKRTVV LVTHKLQYLI HADWIIAMKD GSVLREGTLK DIQTHDVELY 900
  901 EHWKTLMNRQ DQELEKDTDL ESQTTLERKT LRRAFYSREA KNHVDDEDEE EEVEEEDDDN 960
  961 MSTTTSRRSK IPWKMCCCYL SSGGFLMVFL MVSSKLAKHS VMVAIDYWLA AWTSSNPHNQ1020
 1021 SFVNSSFNHT LNDDATQIAE HRSYVPVFII LCAAAIALCL ITSLTVEFLG VAAATNLHHN1080
 1081 LLNKIIHAPI RFFDVTPLGQ ILNRFSADTN IIDQHIPPTL ESLTRSTLLC LSAIGVIAFV1140
 1141 TPAFLIALVP LAVAFYFIQK YFRVASKDLQ ELDDSTQLPL LCHFSETAEG LTTIRAFRHE1200
 1201 ARFKQRMLEL TDTNNTAYLF LSAANRWLEV RTDYLGAVIV LTAAVAAIWS TSPSGLVGLG1260
 1261 LTYALTLTNY LNWVVRNLAD LEVQMAAVKK VNSFLSTESE NYEGSMDVSQ VPEDWPQHGE1320
 1321 ITIHDLCVRY DSMLKPVLKH VNAHINPGQK VGICGRTGSG KSSLSLAFFN MVDVFEGKIV1380
 1381 IDGIDICKLP LQTLRSRLSI ILQDPVLFSG SIRLNLDPER TCTDDRLWEA LEIAQLKNMV1440
 1441 KALPGGLDAV VTEGGENFSV GQRQLFCLAR AFVRKSSILI MDEATASIDM ATENILQKVV1500
 1501 MTAFADRTVV TIAHLVSSIL EAEQVLVFSS GILVENDSAI NLLAQEDSLF GILVRTHK