YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190338738, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRKSIIPE EFALPALVSR VPRKPVFRDR VNKARFIAKS GACNLAHKNI REQGRFLQDV  60
   61 FTTLVDLKWR FTLVIFTMTF LCSWLLFAMS WWLVAFGHGD LDTDRKPAVE QCVTNVNSFT 120
  121 SAFLFSIEVQ VTIGFGGRMI TERCPIAIAF LILQNIIGLI INAVMLGCIF MKTAQSHRRA 180
  181 ETLIFSRHAV IAVRNNRLCF MIRVGDLRKS MIINAVVRLQ VVRKTMTPEG EVIPIQQIDV 240
  241 QTESAVAGNS IFLLAPLIIC HVIDKDSPLY DLSAMELQCS DLEVIVILEG VVETTGITTQ 300
  301 ARTSYVTEEI QWGHRFVPIV TEEEGVYSVD YSKFGNTVKV ATPRCSAREL DEKPSILIQT 360
  361 LQKSELSHQN SLRKRNSMRR NNSMRKGNSM RRNNSALAVP KVQFLTPEGG ANLAVT

Type	Start	End	Confidence
Cytoplasmic	1	70	0.97
Transmembrane Helix	71	94	0.88
Non-Cytoplasmic	95	121	0.88
Transmembrane Helix	122	140	0.55
Cytoplasmic	141	146	0.54
Transmembrane Helix	147	171	0.87
Non-Cytoplasmic	172	416	0.61