YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70802403, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMCTDRCVG VCKLNLALMH FVGMGEVCVW RRCGERGKKK ERNIEDKRKG EGGVHLNCLF  60
   61 CLLMCNMFFT FCASSFVLFY LNQMLPPLGE AHICVKIYKL KYIYIYIRSY LYCFLFLCKC 120
  121 VWDGSICVSE VFYLALDFVL LFVQTYIKGQ GGNYTHAHTQ KKEKDNCHTK SVTIMKISFI 180
  181 GCGNMGECIL GGLIQSKQYP PESIRVFNRT KATVDRLCER YGVGGAQSAT DAAAYADVIV 240
  241 IGVKPKVVCE LLASIQSSVT ANKIIVSVAA AISIASMEKA LGSEARKIVR TMPNLPTRVG 300
  301 AGVTSITSNA HVTASEKETI FQLFRTIGIV VEVLESQIPA VSSVAGASPA YVFMFMEAMA 360
  361 DAAVHGGLPR AQAYELAAQA VLGSAIMLQK CDMSPAQLKD MVCSPGGVTI EAVRILEKGG 420
  421 MRSAVIEAMI ACTDKSKELE KGLN

Type	Start	End	Confidence
Cytoplasmic	1	55	0.79
Transmembrane Helix	56	79	0.90
Non-Cytoplasmic	80	444	0.85