YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abts-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	445	0.89
Transmembrane Helix	446	468	0.89
Cytoplasmic	469	477	0.69
Transmembrane Helix	478	499	0.79
Non-Cytoplasmic	500	528	0.78
Transmembrane Helix	529	551	0.88
Cytoplasmic	552	560	0.63
Transmembrane Helix	561	580	0.82
Non-Cytoplasmic	581	614	0.97
Transmembrane Helix	615	633	0.94
Cytoplasmic	634	648	0.90
Transmembrane Helix	649	670	0.90
Non-Cytoplasmic	671	701	0.93
Transmembrane Helix	702	722	0.95
Cytoplasmic	723	742	0.94
Transmembrane Helix	743	765	0.93
Non-Cytoplasmic	766	814	0.94
Transmembrane Helix	815	837	0.93
Cytoplasmic	838	867	0.95
Transmembrane Helix	868	890	0.80
Non-Cytoplasmic	891	936	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGSPGRHS NKAFSIGSDD GENENVFVEE TSTPPKTPLG TLLTNCTEQS PLILPMPTRP  60
   61 RLEDSPVAEH DHHIVVDVFT VNNDDGTWKQ ASRFARYEED CEGFDNHLGR PHVPCIPMGT 120
  121 YDALKMVTAK SILFPKVQYE SLDEFVNFLE TKIVDPDVPK LGEKIAKLIN DRIAEIEKMR 180
  181 PLHQRNSSST QSLDASNPQT ISTVGIFPRS LLSAPNNLGS LAHHPMRRLP TSHSGLRFGS 240
  241 SFLPQQPVVS QLEPVIWDED NEISMLVAGE IPHVNVCRFI AIRFVETTAM EKIFPNMTNV 300
  301 RHLFFLIGPA LENVTYLDLG RALASVVSNP PATTTFDQLK SPDSITKAIE RFLAGTVVIA 360
  361 PGRIDNKNLV RSDLIRKLVN MQGEKTETKI VHPKDVDVER NATKKAEEAE DKPFRLFSGV 420
  421 TSDLRNRAKH YFSDYRDGFN ISIFTVVFYM FCVTVVPTLT FGAIMGAGTS GLLAVKECLV 480
  481 SQALSGLIWS VLSCQPLLVM SPTGPFLVFE KALFKFTDQN DMDFLEVRFY TGIFLFFISI 540
  541 VGAATNCAHL IHYVTIYTED IFCALISLIF FSEVVEFIHL QEEHNSIENL KYYIENAANC 600
  601 TVTEVKDCAL SRPNTFLLQL IMVVVSIAIF HYLRQVSRST FFGRTFRNLC KNFGGIFAVI 660
  661 AVSIAYRILF QNVGVAVVDI PVAVGQSRPF DGIFVIPSAP PTASTLTIAL ISSILLFVLI 720
  721 FVETEIPEQM ALREGRKLKK GGGLHWDLIV VGFCTLVSSV LGLPWMCPAA VQSLAHITSL 780
  781 TEYKKSAPGV PSRISHVIEQ RVSGMVTYLL LGTFAILGHF LAIPAATIFG VFFYLGVRNL 840
  841 EGSKMILRLK LCFLPSKYRG SHKFLEIVSS LKICIGGLLF PLFIVSNAIF VKHGLSVIFD 900
  901 KELLEALDSE DHDNDDADRD NEENPEDFYQ NTRIPV