YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66910255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPIAVVVCV MGGWCTVYLA DTLLRSSSSV KNRYESWLSS NGFTLSPFHI KWHTGIFNRL  60
   61 FARCAHFNPH FLYIWFSAGM VFGVLAMFGS VVLLSKTLLQ TLHQMMADTP DGSHEQVLQV 120
  121 VVPGVNLPVS QLAYFFIAIL VSGVIHEFGH GVAALREQVR LNGFGMFMFV IYPGAFVDLF 180
  181 TTHLNLISPV QQLRIFCAGV WHNFMLCVVA LSFLFLLPIF LFPFYYTGAG ALVTEVAEGS 240
  241 PSSGPRGLFL GDLITQLEDC TVRGVQDWHS CVQHLSHNPQ TGYCVHTAKL HLSYTQGRAF 300
  301 KRLDGTMECC GNNSLTDLCF SYSNNVESKL FACLPVRKTI EASRTCHTNT DCQTDFTPSL 360
  361 CLIPSLENQT RLIRVKHPPQ TDMLFVGYSS HLQYSVSLTN FVPRLGFLHP DLPVMLETFC 420
  421 KYLVSLSGAL AVVNAVPCFA LDGQWMLTAF LEATLSSVIQ ERNNRELIGF FFLLGGSALL 480
  481 AANVALGLWM VTAR

Type	Start	End	Confidence
Cytoplasmic	1	70	0.78
Transmembrane Helix	71	94	0.91
Non-Cytoplasmic	95	131	0.89
Transmembrane Helix	132	150	0.92
Cytoplasmic	151	160	0.75
Transmembrane Helix	161	182	0.88
Non-Cytoplasmic	183	199	0.84
Transmembrane Helix	200	222	0.88
Cytoplasmic	223	421	0.94
Transmembrane Helix	422	441	0.76
Non-Cytoplasmic	442	467	0.67
Transmembrane Helix	468	491	0.91
Cytoplasmic	492	494	0.60