YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MT12B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	56	0.81
Transmembrane Helix	57	78	0.87
Cytoplasmic	79	85	0.83
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	114	0.71
Transmembrane Helix	115	137	0.91
Cytoplasmic	138	143	0.84
Transmembrane Helix	144	168	0.87
Non-Cytoplasmic	169	174	0.81
Transmembrane Helix	175	194	0.94
Cytoplasmic	195	252	0.92
Transmembrane Helix	253	274	0.89
Non-Cytoplasmic	275	286	0.85
Transmembrane Helix	287	309	0.92
Cytoplasmic	310	320	0.90
Transmembrane Helix	321	340	0.96
Non-Cytoplasmic	341	350	0.64
Transmembrane Helix	351	372	0.82
Cytoplasmic	373	380	0.63
Transmembrane Helix	381	401	0.83
Non-Cytoplasmic	402	410	0.81
Transmembrane Helix	411	433	0.91
Cytoplasmic	434	477	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQEKKKGGV LPPDGGWGWM IVAGCFVVTV CTRAVTRCIS IFFVEFQMHF AKDYSGTAWI  60
   61 HSLVDCTTML CAPLGSLIGN QLSCRIAVIL GGFLASVGLV LSSFATSLEY LYATLGLLTG 120
  121 LGFALCYTPA IAMVGIYFCE RKALAYGIAM SGSGIGTFIL APVVQLLIEH YSWRGALLIL 180
  181 GGFVLNLCVC GALLRPIILK EEEACPLPVD SECGYSVKPP TLNGGPTRSA ASDAKQRCFQ 240
  241 SMQEYHFLLM PDFLVLAGSF LLLASGCSLP FVYLVPYALD VGVGHQHAAF LMSILGVIDI 300
  301 VGNITFGWLT DRRCLKKYRN ICYMFAVGME GLCCLFIPLL RTFVWLVPFS VLYGYFDGAY 360
  361 VALIPVVTSD VVGRQYLSSA LGVVYFLHAV PYLVSPPIGG WLVDTTGTYT ATFFLSGFAL 420
  421 ISSSLLLFSV AIIRYCQRNQ KKNSLSKIPK LVSCEGKQVD YYPPKNKDLM LIIPATS